Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0558
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    33   0.16 
U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine rece...    28   5.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 295 CLTLILTFYSIYLYFINKIRSIGLMKNLSTFQGEFK 188
           C+ ++L F++I+LY  NKIR   ++ N+      +K
Sbjct: 194 CVLIVLLFFAIFLYIHNKIREKRMVHNVYNINSRYK 229


>U64608-3|AAB04593.2|  349|Caenorhabditis elegans Serpentine
           receptor, class v protein7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 280 ELKLNIFCAELRCFMV*LWYIYILYIFSSNV*KKTVVH*ILF 405
           E  LNI  A L C    ++Y Y++Y+F  N    T V  +L+
Sbjct: 235 EYNLNIVAA-LTCVAEIIYYCYVIYVFGINTSVPTRVFYLLY 275


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 539  FIVNNCMYRNYLNFKILIIEKHIMIVLLS*KNKLFYW*IKFY 414
            + +NN +++  L F+IL +E+ + IVL S +    +  I FY
Sbjct: 6905 YFMNNALFKTSLPFEILRLEEILNIVLNSLEKSRSFATIPFY 6946


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,718,998
Number of Sequences: 27780
Number of extensions: 219946
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)