Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0557
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 30 0.24
SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha... 27 1.7
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 3.9
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 26 3.9
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 26 5.2
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 26 5.2
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 6.9
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 6.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 9.1
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 9.1
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 30.3 bits (65), Expect = 0.24
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 125 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 238
TLP +T +T R + PPS SNR + + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492
>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 MVDAATLEKL-EAGFSKLQGSDSKSXLKXYLTREVFDSLKNKKT 168
M DAA++E++ + GF+ +GS+ K +K + EV L+ +T
Sbjct: 90 MEDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQT 133
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 155 RTKRPHSDPPSLTASNRVSRTWTPASVS 238
R RP +PP L+ASN T P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 158 TKRPHSDPPSLTASNRVSRTWTPASVSTRRTPIVLRV 268
T RP + PS + R S TW A++ ++ +V R+
Sbjct: 23 TSRPLHEIPSYQSLARRSSTWKRANIPQQKPSLVRRI 59
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 165 LFVLQAVEYFPGKVXLQXRLRVGSLELAETSLQFLEG--CGVDHC 37
LFV+ VEY PG LR GS +T+ +FL CG+++C
Sbjct: 83 LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 288 IIEDYHNGFKKTDKHPPKNW 347
I++ ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 263 GVRSASGA*IPTPESKFSTP 204
G+ SASG P PES+ STP
Sbjct: 117 GILSASGLTSPIPESRPSTP 136
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 6.9
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = -1
Query: 523 SSPS--KLDRVPETLSSISLXWXSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPS-VST 353
SSP+ L + P T+ + S ++ + +S RPQ + T + LPS VST
Sbjct: 191 SSPNLASLSKQPSTVHAPSTRQRDLKSSILSLYASPRPQVSSSSITTNATYQNLPSPVST 250
Query: 352 S 350
S
Sbjct: 251 S 251
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 19 SARKAATMVDAATLEKLEAGFSKLQGSDSKSXLKXYLTREVFDSLKNKKT 168
S RK EKLE+ + L+ K R++ DS+K KT
Sbjct: 361 SLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKT 410
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 140 TSLVRYXFSXDLESDPWSLLKPASNFSRVAASTIVAAFL 24
+SLV++ ++ +LKP + F V A VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 333 PPKNWGDV 356
PPKNWGDV
Sbjct: 521 PPKNWGDV 528
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,601
Number of Sequences: 5004
Number of extensions: 36337
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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