Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0557
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0447 - 24421442-24422767                                         29   3.1  
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012...    28   5.4  
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    28   7.1  
03_05_0908 + 28686855-28687328                                         27   9.4  

>03_05_0447 - 24421442-24422767
          Length = 441

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 7   DGCXSARKAATMVDAATLEKLEAGFSKLQG-SDSK 108
           DGC S+     ++ AA L +LEAG  K  G SD++
Sbjct: 63  DGCGSSGAGDALLAAAALARLEAGLRKRTGDSDAR 97


>04_03_0999 -
           21600231-21600788,21600896-21601056,21601149-21601241,
           21601379-21601531,21601917-21601992,21602078-21602197,
           21602348-21602597,21602917-21603008,21603408-21603581
          Length = 558

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 424 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 317
           +RP+ +RV  T     +R+P   +  +++ G LS F
Sbjct: 36  KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 233 PTPESKFSTPDWMQS 189
           P PE+K  TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131


>03_05_0908 + 28686855-28687328
          Length = 157

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 36 NNGRRRNPREIGGWFQQAPG 95
          ++G R +PRE+ GWF  A G
Sbjct: 26 SHGARPSPRELQGWFAAAAG 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,927,816
Number of Sequences: 37544
Number of extensions: 303383
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)