Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0557
         (634 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    30   1.5  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    30   1.5  
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.5  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +2

Query: 26  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RXTLPGKYSTA*RTKRPHSDPPSLTASNR 205
           E   ++ +P P++N R  S S   PT+S     ++  K + +   KRP S PPS T+ + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSS-SQSVAAKRAVSAERKRP-STPPSPTSPST 88

Query: 206 VSRTWT---PAS---VSTRRTP 253
             R  +   PAS   +ST R P
Sbjct: 89  PIRDLSIDLPASSRRLSTGRLP 110


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +2

Query: 26  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RXTLPGKYSTA*RTKRPHSDPPSLTASNR 205
           E   ++ +P P++N R  S S   PT+S     ++  K + +   KRP S PPS T+ + 
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSS-SQSVAAKRAVSAERKRP-STPPSPTSPST 88

Query: 206 VSRTWT---PAS---VSTRRTP 253
             R  +   PAS   +ST R P
Sbjct: 89  PIRDLSIDLPASSRRLSTGRLP 110


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 303 HNGFKKTDKHPPKNWGDVDTLGNLDPA 383
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,125,838
Number of Sequences: 28952
Number of extensions: 210443
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)