Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0556
         (459 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 202  KLAEQAERYDDMAAAMKE*RKPASNLATRRG 294
            KL      Y+D      E RK  SNLA   G
Sbjct: 1350 KLKGINNEYEDQTEVPVEMRKTVSNLAQTSG 1380


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 202  KLAEQAERYDDMAAAMKE*RKPASNLATRRG 294
            KL      Y+D      E RK  SNLA   G
Sbjct: 1350 KLKGINNEYEDQTEVPVEMRKTVSNLAQTSG 1380


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 116 SPSDKGISELVLFHRPRCPSTRKNWCN 196
           +PS++ + EL    R  C     +W N
Sbjct: 295 NPSERVMRELGRIFRAYCRENHASWVN 321


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 269 AGFRHSFIAAAMSSYRS 219
           AG  H   AAA ++YRS
Sbjct: 22  AGHHHEQSAAAAAAYRS 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,351
Number of Sequences: 336
Number of extensions: 1868
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10511300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)