Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0556
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    64   1e-11
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    61   7e-11
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    28   0.60 
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    27   1.8  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   3.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   4.2  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +3

Query: 249 EGVTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           + V  T  EL+ EERNLLSV YKNV+GARR+SWR++S IEQK E
Sbjct: 30  KSVASTDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEE 73



 Score = 32.7 bits (71), Expect = 0.028
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 SVDKEELVQRAKLAEQAERYDDMAAAMK 252
           +  +E+ V  AKLAEQAERY+ M   MK
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMK 30


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 61.3 bits (142), Expect = 7e-11
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTEGSER*QQMA 407
           +LS EERNLLSV YKN++GARR+SWR+IS IEQK E     +Q A
Sbjct: 37  KLSVEERNLLSVAYKNIIGARRASWRIISSIEQKEESRGNTRQAA 81



 Score = 35.1 bits (77), Expect = 0.005
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           MS  +E  V  AKLAEQAERY++M   MK+
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKK 30



 Score = 28.3 bits (60), Expect = 0.60
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 371 ENRGFRKITANGIEYRVKVEKELREICYE 457
           E+RG  +  A   EYR K+E EL +IC++
Sbjct: 72  ESRGNTRQAALIKEYRKKIEDELSDICHD 100


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +2

Query: 59  FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 223
           FS +E  ILC     L+L+V  +    ++  S+ + F +PR     K   N   WPN+ S
Sbjct: 39  FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98

Query: 224 DM 229
            +
Sbjct: 99  HL 100


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  PLAPQPFKTSISFSAREKLILCLNLLVQIHFSPSD 127
           PLAP   +   +FSA+E L +   L   +H +P +
Sbjct: 213 PLAPSVVQVLSTFSAQELLNMLSKLQTVVHIAPEE 247


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 71  EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 208
           EKL+ C       HF    +G+ +  L    RC +T    CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 293 PLLVAKFDAGFRHSFIAAAMSSYRSACSANLARCTSSSLST 171
           PL  + F +    SFI + +SS     S++ A  TSSS +T
Sbjct: 65  PLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSAT 105


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 113 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 235
           FSP +K  + +L LFH  + PS+++    V N  +  SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,390
Number of Sequences: 5004
Number of extensions: 33174
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)