Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0556
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 66 1e-11
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 64 4e-11
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 63 9e-11
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 62 2e-10
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 61 4e-10
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 61 4e-10
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 48 5e-06
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 48 5e-06
11_08_0071 + 28153043-28153555 30 1.0
02_05_0552 - 29911280-29912541,29912633-29912762 29 2.4
06_01_0765 - 5723130-5724631,5725218-5725386 28 3.1
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724... 28 4.2
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 27 7.3
04_04_0232 + 23794109-23794399,23795290-23796621 27 7.3
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 27 7.3
10_07_0052 - 12382975-12383141,12384032-12384458,12385047-12385097 27 9.6
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 27 9.6
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 66.5 bits (155), Expect = 1e-11
Identities = 32/47 (68%), Positives = 36/47 (76%)
Frame = +3
Query: 243 RDEGVTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTEG 383
R G G EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK EG
Sbjct: 10 RAAGGASGGEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEG 56
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 64.5 bits (150), Expect = 4e-11
Identities = 29/39 (74%), Positives = 34/39 (87%)
Frame = +3
Query: 267 GVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTEG 383
G EL+ EERNLLSV YKNV+GARR+SWR++S IEQK EG
Sbjct: 45 GGELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEG 83
Score = 35.1 bits (77), Expect = 0.027
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +1
Query: 178 KEELVQRAKLAEQAERYDDMAAAMKE 255
+EE+V AKLAEQAERY++M M++
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEK 35
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 63.3 bits (147), Expect = 9e-11
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +3
Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTEG 383
EL+ EERNLLSV YKNV+GARR+SWR++S IEQK EG
Sbjct: 37 ELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEG 73
Score = 33.5 bits (73), Expect = 0.084
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 172 VDKEELVQRAKLAEQAERYDDMAAAMKE 255
+ +EE V AKLAEQAERY++M M++
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEK 28
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = +3
Query: 258 TETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
T+ G EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 38 TDVG-ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 77
Score = 33.9 bits (74), Expect = 0.063
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 160 STMSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
S +EE V AKLAEQAERY++M M++
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEK 33
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 371 ENRGFRKITANGIEYRVKVEKELREIC 451
E+RG A+ EYR ++E EL +IC
Sbjct: 77 ESRGNEAYVASIKEYRSRIETELSKIC 103
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 61.3 bits (142), Expect = 4e-10
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +3
Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 43 ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 78
Score = 34.7 bits (76), Expect = 0.036
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 157 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
S+ + +EE V AKLAEQAERY++M M++
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEK 34
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 61.3 bits (142), Expect = 4e-10
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +3
Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 261 ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 296
Score = 34.3 bits (75), Expect = 0.048
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 157 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
S + +EE V AKLAEQAERY++M M++
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEK 252
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 47.6 bits (108), Expect = 5e-06
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 270 VELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTEGSER 392
V++S EER L SV +K +GARR+SWR++ +EQK ++
Sbjct: 35 VDMSAEERLLFSVGFKKTIGARRASWRILESLEQKVTAGDQ 75
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +1
Query: 175 DKEELVQRAKLAEQAERYDDMAAAMK 252
++E++V+ AKLAEQAERYDDM MK
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMK 28
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 47.6 bits (108), Expect = 5e-06
Identities = 21/35 (60%), Positives = 28/35 (80%)
Frame = +3
Query: 276 LSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
L+ EERNLLSV YKN++GA+R++ R+I IE K E
Sbjct: 15 LTKEERNLLSVGYKNLIGAKRAAMRIIGSIELKEE 49
>11_08_0071 + 28153043-28153555
Length = 170
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 162 GRWKRTNSLMPLSEGEKCI*TSKFKHNISFSLALNDILV 46
G W R N+ PL + + H++S S++L +ILV
Sbjct: 130 GTWLRANTSCPLCRADTTPSSGDLHHHLSISVSLEEILV 168
>02_05_0552 - 29911280-29912541,29912633-29912762
Length = 463
Score = 28.7 bits (61), Expect = 2.4
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +1
Query: 103 SNTFFPFRQGHQ*ISPLPSSTMSVDKEELVQRAKL-AEQAERYDDMAAAMK-----E*RK 264
S T H SP+PSS +EEL++R +L AE +R M AA+ + K
Sbjct: 50 SGTTVALNHRHGPCSPVPSSKKRPTEEELLKRDQLRAEHIQRKFAMNAAVDGAGDLQQSK 109
Query: 265 PASNLATRRGTS 300
+S++ T+ G+S
Sbjct: 110 VSSSVPTKLGSS 121
>06_01_0765 - 5723130-5724631,5725218-5725386
Length = 556
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 241 PPCRHIAQLVRPIWHVAPVLPCRR 170
PPCR + P +HVAP+ C+R
Sbjct: 505 PPCRRDMSM-EPCFHVAPLYDCKR 527
>03_02_0300 -
7246312-7246662,7246757-7246831,7246920-7246993,
7247247-7247334,7247464-7247615,7247702-7247861,
7247940-7248095,7248181-7248396,7248808-7249065,
7249816-7250019,7251334-7251423
Length = 607
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 249 EGVTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQK 374
EG+TET ++L E+R +S + +VG W ++ EQ+
Sbjct: 237 EGLTETILKLKAEKRTRVS-KLQEIVGKLHKLWNLMESTEQE 277
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 249 EGVTETGVELSNEERNLLSVXYKNVVGARRSSW 347
EGV E S E + ++ + NVVG R W
Sbjct: 815 EGVARPKKEFSKEAKKFANIRHPNVVGLRGYYW 847
>04_04_0232 + 23794109-23794399,23795290-23796621
Length = 540
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 32 PQPFKTSISFSAREKLILCLNLLVQIHFSPSDKG 133
P P+ T F+ + L+LC L Q+ PS G
Sbjct: 357 PSPYDTIARFTDAKNLVLCGGALYQVWRRPSGAG 390
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 26 LAPQPFKTSISFSAREKL---ILCLNLLVQIHFSPSDKGISELV 148
++P FKT+++FS EKL + L L +F D +S LV
Sbjct: 338 ISPSHFKTTLTFSLAEKLPKGDMVLKALYANYFQLLDTSLSHLV 381
>10_07_0052 - 12382975-12383141,12384032-12384458,12385047-12385097
Length = 214
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 391 LSEPSVFCSIXEMTRHDDRRAPTTFL*XTERR 296
L++ S CSI ++TR D + A T TER+
Sbjct: 154 LADKSTGCSIRKITRSDKKPAKTRSFVETERK 185
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 269 AGFRHSFIAAAMSSY-RSACSANLARCTSSSLSTDIVDD 156
+GFR S IA A+ SY R A +A A SLS D+ DD
Sbjct: 526 SGFRSSSIAKALVSYPRKAGAAAAAADEMMSLS-DLADD 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,185,477
Number of Sequences: 37544
Number of extensions: 245131
Number of successful extensions: 650
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -