SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0556
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1) i...    62   1e-10
At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identi...    62   1e-10
At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11) ide...    62   1e-10
At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10) ide...    62   1e-10
At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10) ide...    62   1e-10
At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10) ide...    62   1e-10
At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi /  general...    61   3e-10
At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical...    61   3e-10
At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identica...    61   3e-10
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi...    61   4e-10
At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5) iden...    60   7e-10
At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical...    59   1e-09
At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identi...    58   4e-09
At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identi...    58   4e-09
At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1...    56   2e-08
At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10) s...    47   7e-06
At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar ...    46   9e-06
At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.0  
At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein con...    28   2.6  
At1g60640.1 68414.m06826 expressed protein                             27   4.6  
At2g15760.1 68415.m01804 calmodulin-binding protein similar to A...    27   6.1  
At1g18180.1 68414.m02260 expressed protein                             27   6.1  
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ...    27   8.1  

>At5g38480.1 68418.m04651 14-3-3 protein GF14 psi (GRF3) (RCI1)
           identical to 14-3-3 protein GF14 psi GI:1168200,
           SP:P42644
          Length = 255

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           ELS EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 38  ELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 73



 Score = 33.1 bits (72), Expect = 0.093
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +1

Query: 178 KEELVQRAKLAEQAERYDDMAAAMKE 255
           +EE V  AKLAEQAERY++M   M++
Sbjct: 4   REENVYMAKLAEQAERYEEMVEFMEK 29


>At1g78300.1 68414.m09125 14-3-3 protein GF14 omega (GRF2) identical
           to GF14omega isoform GI:487791 from [Arabidopsis
           thaliana]
          Length = 259

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = +3

Query: 267 GVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           G EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 37  GDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 74



 Score = 35.5 bits (78), Expect = 0.017
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           M+  +EE V  AKLAEQAERY++M   M++
Sbjct: 1   MASGREEFVYMAKLAEQAERYEEMVEFMEK 30


>At1g34760.1 68414.m04323 14-3-3 protein GF14 omicron (GRF11)
           identical to SP:Q9S9Z8, 14-3-3-like protein GF14 omicron
           (General regulatory factor 11){Arabidopsis thaliana}
          Length = 255

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +3

Query: 255 VTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           V    VEL+ EERNLLSV YKNV+GARR+SWR++S IEQK E
Sbjct: 31  VAALDVELTIEERNLLSVGYKNVIGARRASWRILSSIEQKEE 72



 Score = 33.9 bits (74), Expect = 0.053
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           M  ++ + V  AKL EQAERYD+M  AMK+
Sbjct: 1   MENERAKQVYLAKLNEQAERYDEMVEAMKK 30



 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 371 ENRGFRKITANGIEYRVKVEKELREICYE 457
           E++G  +      +YR KVE+EL +ICY+
Sbjct: 72  ESKGNEQNAKRIKDYRTKVEEELSKICYD 100


>At1g22300.3 68414.m02790 14-3-3 protein GF14 epsilon (GRF10)
           identical to 14-3-3 protein GF14 epsilon GI:5802798,
           SP:P48347 from [Arabidopsis thaliana]
          Length = 251

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +3

Query: 255 VTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           V +  VEL+ EERNL+SV YKNV+GARR+SWR++S IEQK E
Sbjct: 31  VAQLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEE 72



 Score = 35.9 bits (79), Expect = 0.013
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           M  ++E+ V  AKL+EQ ERYD+M  AMK+
Sbjct: 1   MENEREKQVYLAKLSEQTERYDEMVEAMKK 30


>At1g22300.2 68414.m02789 14-3-3 protein GF14 epsilon (GRF10)
           identical to 14-3-3 protein GF14 epsilon GI:5802798,
           SP:P48347 from [Arabidopsis thaliana]
          Length = 254

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +3

Query: 255 VTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           V +  VEL+ EERNL+SV YKNV+GARR+SWR++S IEQK E
Sbjct: 31  VAQLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEE 72



 Score = 35.9 bits (79), Expect = 0.013
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           M  ++E+ V  AKL+EQ ERYD+M  AMK+
Sbjct: 1   MENEREKQVYLAKLSEQTERYDEMVEAMKK 30


>At1g22300.1 68414.m02788 14-3-3 protein GF14 epsilon (GRF10)
           identical to 14-3-3 protein GF14 epsilon GI:5802798,
           SP:P48347 from [Arabidopsis thaliana]
          Length = 254

 Score = 62.5 bits (145), Expect = 1e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +3

Query: 255 VTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           V +  VEL+ EERNL+SV YKNV+GARR+SWR++S IEQK E
Sbjct: 31  VAQLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEE 72



 Score = 35.9 bits (79), Expect = 0.013
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           M  ++E+ V  AKL+EQ ERYD+M  AMK+
Sbjct: 1   MENEREKQVYLAKLSEQTERYDEMVEAMKK 30


>At4g09000.1 68417.m01487 14-3-3-like protein GF14 chi /  general
           regulatory factor 1 (GRF1) identical to 14-3-3 protein
           GF14 chi chain GI:1702986, SP:P42643 from [Arabidopsis
           thaliana]
          Length = 267

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 44  ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 79



 Score = 33.1 bits (72), Expect = 0.093
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 178 KEELVQRAKLAEQAERYDDMAAAMKE 255
           ++E V  AKLAEQAERY++M   M++
Sbjct: 10  RDEFVYMAKLAEQAERYEEMVEFMEK 35


>At3g02520.1 68416.m00240 14-3-3 protein GF14 nu (GRF7) identical to
           14-3-3 protein GF14 nu GI:1531631 from [Arabidopsis
           thaliana]
          Length = 265

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 39  ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 74



 Score = 35.5 bits (78), Expect = 0.017
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           MS  +EE V  AKLAEQAERY++M   M++
Sbjct: 1   MSSSREENVYLAKLAEQAERYEEMVEFMEK 30


>At1g35160.1 68414.m04360 14-3-3 protein GF14 phi (GRF4) identical
           to GF14 protein phi chain GI:1493805, SP:P46077 from
           [Arabidopsis thaliana]
          Length = 267

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK E
Sbjct: 45  ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE 80



 Score = 33.9 bits (74), Expect = 0.053
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +1

Query: 178 KEELVQRAKLAEQAERYDDMAAAMKE 255
           +EE V  AKLAEQAERY++M   M++
Sbjct: 11  REEFVYLAKLAEQAERYEEMVEFMEK 36


>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
           to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
           thaliana]
          Length = 268

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = +3

Query: 255 VTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           V     EL+ EERNLLSV YKNV+GARR+SWR++S IEQK E
Sbjct: 36  VARVNSELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEE 77



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +1

Query: 151 LPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKE*RKPASNL 279
           + SS    ++E  V  AKL+EQAERYD+M   MK+  +  S L
Sbjct: 1   MSSSGSDKERETFVYMAKLSEQAERYDEMVETMKKVARVNSEL 43


>At5g16050.1 68418.m01876 14-3-3 protein GF14 upsilon (GRF5)
           identical to 14-3-3 protein GF14 upsilon GI:2232148 from
           [Arabidopsis thaliana]
          Length = 268

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           EL+ EERNLLSV YKNV+GARR+SWR+IS IEQK +
Sbjct: 41  ELTVEERNLLSVAYKNVIGARRASWRIISSIEQKED 76



 Score = 32.7 bits (71), Expect = 0.12
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +1

Query: 178 KEELVQRAKLAEQAERYDDMAAAMKE 255
           +EE V  AKLAEQAERY++M   M++
Sbjct: 7   REENVYLAKLAEQAERYEEMVEFMEK 32


>At2g42590.1 68415.m05270 14-3-3 protein GF14 mu (GRF9) identical to
           GF14 mu GI:3551052, SP:Q96299 from [Arabidopsis
           thaliana]
          Length = 263

 Score = 59.3 bits (137), Expect = 1e-09
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = +3

Query: 249 EGVTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQK 374
           + V +  V+L+ EERNLLSV YKNV+G+RR+SWR+ S IEQK
Sbjct: 31  KSVAKLNVDLTVEERNLLSVGYKNVIGSRRASWRIFSSIEQK 72



 Score = 32.3 bits (70), Expect = 0.16
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 175 DKEELVQRAKLAEQAERYDDMAAAMK 252
           +++  V  AKL+EQAERY++M  +MK
Sbjct: 6   ERDTFVYLAKLSEQAERYEEMVESMK 31


>At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identical
           to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
           [Arabidopsis thaliana]
          Length = 246

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 252 GVTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           G T  G EL+ EERNLLSV YKNV+G+ R++WR++S IEQK E
Sbjct: 36  GATPAG-ELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEE 77



 Score = 32.7 bits (71), Expect = 0.12
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 169 SVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           ++ +++ V  AKLAEQAERY++M   M++
Sbjct: 4   TLSRDQYVYMAKLAEQAERYEEMVQFMEQ 32


>At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identical
           to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
           [Arabidopsis thaliana]
          Length = 248

 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 27/43 (62%), Positives = 34/43 (79%)
 Frame = +3

Query: 252 GVTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           G T  G EL+ EERNLLSV YKNV+G+ R++WR++S IEQK E
Sbjct: 36  GATPAG-ELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEE 77



 Score = 32.7 bits (71), Expect = 0.12
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 169 SVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           ++ +++ V  AKLAEQAERY++M   M++
Sbjct: 4   TLSRDQYVYMAKLAEQAERYEEMVQFMEQ 32


>At5g10450.1 68418.m01211 14-3-3 protein GF14 lambda (GRF6) (AFT1)
           identical to 14-3-3 GF14lambda GI:1345595 from
           [Arabidopsis thaliana]
          Length = 248

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 24/36 (66%), Positives = 31/36 (86%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           EL+ EERNLLSV YKNV+G+ R++WR++S IEQK E
Sbjct: 42  ELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEE 77



 Score = 32.3 bits (70), Expect = 0.16
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +1

Query: 169 SVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           ++ +++ V  AKLAEQAERY++M   M++
Sbjct: 4   TLGRDQYVYMAKLAEQAERYEEMVQFMEQ 32


>At1g22290.1 68414.m02787 14-3-3 protein GF14, putative (GRF10)
           similar to 14-3-3 protein GF14 epsilon GI:5802798 from
           [Arabidopsis thaliana]
          Length = 196

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +3

Query: 273 ELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTE 380
           ELS +ERNL+SV YKNV+ ARR+S  ++S I QK E
Sbjct: 41  ELSAKERNLVSVGYKNVISARRASLEILSSIVQKEE 76


>At1g78220.1 68414.m09115 14-3-3 protein GF14 pi (GRF13) similar to
           GF14 epsilon isoform GI:1022778 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00244 14-3-3
           proteins
          Length = 245

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = +3

Query: 255 VTETGVELSNEERNLLSVXYKNVVGARRSSWRVISXIEQKTEGSE 389
           V E  +ELS EER+LL+  YKNV+ A+R S RVIS IE K E S+
Sbjct: 31  VCELDIELSEEERDLLTTGYKNVMEAKRVSLRVISSIE-KMEDSK 74



 Score = 29.9 bits (64), Expect = 0.86
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKE 255
           M  ++E+L+  AKL  QA RYDD+  +M++
Sbjct: 1   MENEREKLIYLAKLGCQAGRYDDVMKSMRK 30


>At1g05670.1 68414.m00588 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein similar to UDP-glucose:salicylic acid
           glucosyltransferase [Nicotiana tabacum] GI:7385017;
           contains Pfam profiles PF00201: UDP-glucoronosyl and
           UDP-glucosyl transferase, PF01535: PPR repeat
          Length = 1184

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +2

Query: 65  AREKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPS 175
           A+++++L + + V+I+ + S K    +V+F+R  CPS
Sbjct: 420 AQKRIVLFVKMTVRIYDAVSTKIPKSIVVFNRTPCPS 456


>At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to beta-glucosidase GB:AAC31962 [Arabidopsis
           thaliana]; similar to thioglucoside glucohydrolase
           (GI:984052) [Arabidopsis thaliana]
          Length = 531

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 234 HGGRDEGVTETGVELSNEERNLL 302
           HG +D+GV+ETGV+  N+  N L
Sbjct: 122 HGKKDKGVSETGVKFYNDLINEL 144


>At1g60640.1 68414.m06826 expressed protein
          Length = 340

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 157 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKE*RKPASNLATRRGTSFQ 306
           SS      E+LV+  K+    E  DD+  A +E  K  +  + R+G   Q
Sbjct: 136 SSKKHARMEKLVKEGKIRTDDEEVDDLETASQEKEKKGNRRSQRQGKRSQ 185


>At2g15760.1 68415.m01804 calmodulin-binding protein similar to
           AR781 GI:1669593 from [Arabidopsis thaliana]; AR781
           complements pheromone receptor deficient mutant of
           Shizosaccharomyces pombe
          Length = 315

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 100 GSNTFFPFRQGHQ*ISPLPSSTMSVDKEELVQRAKL 207
           GS++    R+G + +SPL  S + VD+EE VQ  K+
Sbjct: 137 GSSSSRYDRKGSRSMSPLRVSDIMVDEEEEVQSTKM 172


>At1g18180.1 68414.m02260 expressed protein
          Length = 292

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
 Frame = +2

Query: 164 RCPSTRKNWCNVPNW-----PNKLSDMTTW 238
           +CP  +  WC+V  W     PN   +M  W
Sbjct: 164 KCPENKGKWCDVGVWKYSRHPNYFGEMLLW 193


>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
           subunit-related contains similarity to Swiss-Prot:P80387
           5'-AMP-activated protein kinase, beta-1 subunit (AMPK
           beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
          Length = 591

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 38  PFKTSISFSAREKLILCLNLLVQI 109
           P K + SF  R+KL LC+ LL+++
Sbjct: 356 PIKDADSFDLRKKLPLCVGLLLRL 379


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,515,030
Number of Sequences: 28952
Number of extensions: 183474
Number of successful extensions: 465
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -