Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0554
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)                       28   4.2  
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
          Length = 960

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -1

Query: 276 MNCLTTSNSCTCRNFS---RCYTPWRSP*CPQTWSAGGYG 166
           + CL  +N  TC   +    C T W  P C  + SAG YG
Sbjct: 670 LKCLCANNG-TCNAITGRCSCGTGWTGPSCNASCSAGRYG 708


>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 985

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 152 DAKLLHLHVKVYHWF 108
           D  LLHLHV VY++F
Sbjct: 158 DVYLLHLHVSVYNYF 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,465
Number of Sequences: 59808
Number of extensions: 229316
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)