Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0554
         (456 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012978-1|AAH12978.1|  368|Homo sapiens ankyrin repeat domain 4...    31   2.5  
U77493-1|AAB19224.1|  263|Homo sapiens Notch2 protein.                 30   3.3  
Z98750-1|CAD92590.2|  504|Homo sapiens myocilin, trabecular mesh...    29   7.6  
Z97171-1|CAB09899.1|  504|Homo sapiens GLC1A protein.                  29   7.6  
U85257-1|AAC52051.1|  504|Homo sapiens trabecular meshwork induc...    29   7.6  
D88214-1|BAA23531.1|  504|Homo sapiens myocilin protein.               29   7.6  
BC029261-1|AAH29261.1|  504|Homo sapiens myocilin, trabecular me...    29   7.6  
AY599652-1|AAT09137.1|  260|Homo sapiens myocilin protein.             29   7.6  
AK097310-1|BAC04997.1|  457|Homo sapiens protein ( Homo sapiens ...    29   7.6  
AF049793-1|AAC14264.1|  504|Homo sapiens myocilin protein.             29   7.6  
AF001620-1|AAC51725.1|  504|Homo sapiens trabecular meshwork-ind...    29   7.6  
AB006688-1|BAA24532.1|  490|Homo sapiens myocilin protein.             29   7.6  

>BC012978-1|AAH12978.1|  368|Homo sapiens ankyrin repeat domain 40
           protein.
          Length = 368

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 195 DIKEIAKEYNIEKSCDKYMNSMSLSSSWRCIRWACSR 305
           DI+E+ K   +E   D  +NS +  + W C+ WAC R
Sbjct: 22  DIREVQKL--VESGVD--VNSQNEVNGWTCLHWACKR 54


>U77493-1|AAB19224.1|  263|Homo sapiens Notch2 protein.
          Length = 263

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = -1

Query: 306 RGSMPILYISMNCLTTSNSCT---CRNFSRCYTPWRSP--*CPQTWSAGGY 169
           R S P+ Y   NC T  N C+   C+N   C     SP   CP  W  G Y
Sbjct: 82  RCSCPLGYTGKNCQTLVNLCSRSPCKNKGTCVQKKASPQCLCPSGW-VGAY 131


>Z98750-1|CAD92590.2|  504|Homo sapiens myocilin, trabecular
           meshwork inducible glucocorticoid response protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>Z97171-1|CAB09899.1|  504|Homo sapiens GLC1A protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>U85257-1|AAC52051.1|  504|Homo sapiens trabecular meshwork
           inducible glucocorticoid response protein protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>D88214-1|BAA23531.1|  504|Homo sapiens myocilin protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>BC029261-1|AAH29261.1|  504|Homo sapiens myocilin, trabecular
           meshwork inducible glucocorticoid response protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>AY599652-1|AAT09137.1|  260|Homo sapiens myocilin protein.
          Length = 260

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 51  VRQVFEYDLISQFMQGYPSKVHILPR 76


>AK097310-1|BAC04997.1|  457|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39991 fis, clone STOMA2000888, highly similar to
           MYOCILIN PRECURSOR. ).
          Length = 457

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 248 VRQVFEYDLISQFMQGYPSKVHILPR 273


>AF049793-1|AAC14264.1|  504|Homo sapiens myocilin protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>AF001620-1|AAC51725.1|  504|Homo sapiens trabecular
           meshwork-induced glucocorticoid response protein
           protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 295 VRQVFEYDLISQFMQGYPSKVHILPR 320


>AB006688-1|BAA24532.1|  490|Homo sapiens myocilin protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LRQVHEFDVVKQFMEMY--KMGMLPR 307
           +RQV E+D++ QFM+ Y  K+ +LPR
Sbjct: 281 VRQVFEYDLISQFMQGYPSKVHILPR 306


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,356,597
Number of Sequences: 237096
Number of extensions: 1068957
Number of successful extensions: 2421
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2421
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)