Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0554
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   4.9  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 96  VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNSMSLSSS 275
           +F K+  V     M+    + ++ HI QP    ++  I    N+E +        S +S 
Sbjct: 68  LFIKKDQVTPRPIMRRSTQLSIIHHIRQPCQ-SNVPRICDAPNLETTATSTTKLFSWNSQ 126

Query: 276 WRCIR 290
           W C+R
Sbjct: 127 WTCLR 131


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 412 RSPHENIEVLSVVEDSEDFD 353
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 279 SMNCLTTSNSCTCRNFSRCYTPWRSP*CPQTWSAGGYG 166
           S + L +++SC C+  S C    RS   P   S+GG+G
Sbjct: 17  SCSPLPSTSSCGCQASSSCANSCRSTCRPTCSSSGGFG 54


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 270 CLTTSNSCTCRNFSRCYTPWRSP*CPQTWS 181
           C T SNSCT R  S+C     +P C  T S
Sbjct: 121 CNTGSNSCTNRCNSQCLQICTTPSCTNTCS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,879
Number of Sequences: 27780
Number of extensions: 160141
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)