Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0551
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    29   2.0  
At3g58110.1 68416.m06480 expressed protein                             29   3.5  
At2g42370.1 68415.m05243 expressed protein                             28   6.2  

>At4g08850.2 68417.m01455 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1009

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 450  LLGEKKQXXDSETXRXTLQKTDDSXVNFVEGTGGYVFSSTNFEKLN 313
            LLGE  +   S+     L K D S  + V GT GYV   T F+ L+
Sbjct: 912  LLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPGTLFDPLD 957


>At3g58110.1 68416.m06480 expressed protein
          Length = 784

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 387 DDSXVNF-VEGTGGYVFSSTNFEKLNAPQQKQ 295
           DD  V   V+G+GG V S+T  EKL   Q+++
Sbjct: 679 DDKQVYMDVKGSGGLVLSTTEIEKLRLKQEEE 710


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 366 VEGTGGYVFSSTNFEKLNAPQQKQ 295
           V+GTGG V S+   EKL   ++K+
Sbjct: 624 VKGTGGLVLSTAEIEKLRLKEEKE 647


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,256,017
Number of Sequences: 28952
Number of extensions: 107859
Number of successful extensions: 184
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)