Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0549
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...    51   2e-07
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.4  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    25   7.4  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   9.7  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/56 (37%), Positives = 35/56 (62%)
 Frame = +1

Query: 493 VESRHQNFLSPDTCGGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXLXXRKP 660
           +++   +FL+    GG+ LV   G+I++ NTL +RLE++ ++ LPEIR  L    P
Sbjct: 166 LDAETDDFLNDSVLGGVVLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGENP 221



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +2

Query: 272 VRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGK 451
           + ++     K+L  + +    Y++ +  LIVQA+  L EP   +  RQ D  +V++ + K
Sbjct: 91  IDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQAMELLGEPVGIVYSRQRDAEIVKAAIPK 150

Query: 452 A 454
           A
Sbjct: 151 A 151


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 266 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 391
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 221 EHAEPSSSEGTEVREDHVRNVLDEARKRLAEVPKDTKLYSE 343
           EH +P  ++     +D V   L E++KR A + +  +L++E
Sbjct: 521 EHLQPCYNDPNNTFKDDVAKTLIESKKRKAIIIEGAELFNE 561


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 469 LVVCLGFSEQGLHQSLVGLTDADSDSGFHELEESLHNKCDQQL*VQFGV 323
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 176 KEGEAG*TSEEDPIFEHAEPSSSEGTEVREDHVRNVLDEARKRLAEVPKDT 328
           KEG +   S  + +FE  +PS S    +R     +    + KR++ +P +T
Sbjct: 295 KEGSSSSESVYEDVFEDFDPSGSNQASLRSTSTIHYTPSS-KRISVIPPNT 344


>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 222 NMLNQARLKVLKCVKIMYVMYSTKL 296
           NM+ Q  L VL+C  I    Y+TK+
Sbjct: 62  NMITQTSLYVLRCNNISTFPYATKI 86


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 367 GSLPAHGTHCHYPRPSNRQGSGGVP 441
           GSL  + +  H P+P +RQ S  VP
Sbjct: 28  GSLVTYDSRLHLPQPKDRQCSTLVP 52


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/94 (22%), Positives = 46/94 (48%)
 Frame = +2

Query: 221 EHAEPSSSEGTEVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVT 400
           E+ E SSS+ +  +E H +      RK+L +  K  K +++   +L  ++L+  +    +
Sbjct: 94  ENDEESSSQKSNSKESHAQ------RKKLQKERKAMKPFAD--TSLKAKSLWDKLRQKTS 145

Query: 401 IRVRQTDKALVESLLGKAQTDYKNXIKKDVVLKV 502
           I+  +  K ++  L    +T+ K  + K  + +V
Sbjct: 146 IKAEER-KTIIAELFDLIRTNVKQLVFKHDMSRV 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,747
Number of Sequences: 5004
Number of extensions: 44780
Number of successful extensions: 132
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)