Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0549
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 53 2e-07
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 47 1e-05
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 46 2e-05
12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076... 32 0.47
02_05_0534 + 29819323-29819900,29820122-29820202,29821007-298210... 32 0.47
09_02_0115 + 4413714-4414475 29 2.5
01_03_0003 + 11509530-11512772 29 4.4
01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736 28 5.8
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 28 7.6
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 28 7.6
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 28 7.6
03_02_0011 - 4909292-4909434,4909520-4909626,4910100-4910171,491... 28 7.6
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Frame = +2
Query: 254 EVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 433
+ ++D V ++ ++A K+L V + Y LL L+VQ L +L EP V +R R+ D V
Sbjct: 83 QAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQGLLRLKEPAVLLRCRKEDHHHV 142
Query: 434 ESLLGKAQTDY--KNXIKKDVVLKVDTRTFCRPTP 532
ES+L A+ +Y K + +L VD + P+P
Sbjct: 143 ESVLHSAKNEYASKAEVHHPEIL-VDHDVYLPPSP 176
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +3
Query: 9 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 188
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 189 XXXXXXXIQSSNMLNQARLKVLK 257
I+ S LN +R+KVL+
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQ 83
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 505 HQNFLSPDTCGGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXL 645
H+ F S GG+ L + G+I NTL++RLE++ ++ LPEIR L
Sbjct: 182 HERFCS----GGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLL 224
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Frame = +2
Query: 236 SSSEGTEVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ----------ALFQLM 385
S E + ++D ++L+ A K L + +D +Y LL IVQ +L +L
Sbjct: 78 SRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQDKLTKKNPEQSLLRLK 137
Query: 386 EPTVTIRVRQTDKALVESLLGKAQTDYKNXIK-KDVVLKVDTRTFCRPTP 532
EP V +R R+ D+ LVES+L A+ +Y + + VD + P P
Sbjct: 138 EPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVYLPPAP 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +3
Query: 9 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 188
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 189 XXXXXXXIQSSNMLNQARLKVLK 257
I+ S LN +RL+VL+
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQ 84
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 505 HQNFLSPDTCGGIELVAARGRIQISNTLESRLELIAQQLLPE 630
H P GG+ L + G+I NTL++RLE++ ++ LPE
Sbjct: 189 HYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +3
Query: 9 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 188
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 189 XXXXXXXIQSSNMLNQARLKVLK 257
I+ S LN AR+KVL+
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLR 83
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Frame = +2
Query: 272 VRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ-----------ALFQLMEPTVTIRVRQT 418
V + ++A K L V KD Y ++L LIVQ +L +L EP+V +R R+
Sbjct: 89 VGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQRKDSEIIDQIQSLLRLREPSVVLRCREA 148
Query: 419 DKALVESLLGKAQTDYKNXIKKDV-VLKVDTRTFCRP 526
D+ VES+L A+ +Y K ++ + +D + + P
Sbjct: 149 DRGHVESVLEAAKKEYAEKAKVNLPKILIDGKVYLPP 185
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 523 PDTCGGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXLXXRK 657
P GG+ + + G+I NTL++R+E+ +Q LPEIR L +K
Sbjct: 195 PFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQK 239
>12_02_0781 + 23105554-23106855,23107191-23107511,23107581-23107667,
23107907-23108302,23108327-23108500,23108600-23108764,
23108857-23109151,23109319-23109446,23109681-23109986,
23110531-23110591,23110676-23110915,23111251-23111372
Length = 1198
Score = 31.9 bits (69), Expect = 0.47
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +2
Query: 125 KGPSCPAATSQDYGIL*KEGEAG*TSEEDPIFEHAEPSSSEGTEVREDHVRNVLDEARKR 304
KG SC GI+ + G +G T+ + IF EPS + T +D L + R R
Sbjct: 968 KGISCTFQGGDKIGIVGRTG-SGKTTLINAIFRLVEPSGGKITIDGQDITTMGLHDLRSR 1026
Query: 305 LAEVPKDTKLYS 340
+ +P+D L++
Sbjct: 1027 IGLIPQDPILFN 1038
>02_05_0534 +
29819323-29819900,29820122-29820202,29821007-29821027,
29821310-29821366,29822028-29822147,29822278-29822494
Length = 357
Score = 31.9 bits (69), Expect = 0.47
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 391 HCHYPRPSNRQGSGGVPARKSPNRLQEXDQEGCCVESRHQNFLSPDTCGGIELVAARGRI 570
H H+ PS G GG PA SP ++ + EG VE R + L+ +T EL A R +
Sbjct: 33 HRHFSAPSQPDGGGG-PAPVSPESMKHQEIEGPTVE-RDTSPLADET--RRELDALRAAV 88
Query: 571 Q-ISNTL 588
Q IS +L
Sbjct: 89 QRISGSL 95
>09_02_0115 + 4413714-4414475
Length = 253
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 337 LRAAGHTYCAGSLPAHGTHCHYPRPSNRQGSGG 435
LR H+ + SLP H H+PRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>01_03_0003 + 11509530-11512772
Length = 1080
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 481 EGCCVESRHQNFLSPDTCGGIELVAARGRIQISNTLESRLELI 609
E C V H DT G E+V G ++TL +RLE+I
Sbjct: 962 EECWVSINHSQINCTDTSGYSEIVDGNGSECPNSTLPARLEVI 1004
>01_01_0784 + 6068230-6068580,6068676-6069127,6070208-6070736
Length = 443
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 358 YCAGSLPAHGTHCHYPRPSNRQGSGGVPARKSPN 459
YC P H T+ + N+ GSGGV A S N
Sbjct: 279 YCTTQPPHHMTYFKFFFQKNQWGSGGVQAPASEN 312
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +2
Query: 203 EEDPIFEHAEPSSSEGTEVREDHVRNVLDEARKRLAEVP-----KDTKLYSELLVTLIVQ 367
+E + P S+G +E H +V E KRL ++ KD + ++L ++ +
Sbjct: 405 QEKIVLPRKLPKGSKGAHGKEQHAASVYSEIEKRLKDLDFQQSNKDLRALKQILDSMQAK 464
Query: 368 ALFQ 379
L Q
Sbjct: 465 GLLQ 468
>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 209 DPIFEHAEPSSSEGTEVREDHVRNVLDEARKRLAEV 316
DP+ E + S G EVR H + + +RL V
Sbjct: 2576 DPLVEWTKSHKSSGVEVRNPHAQRAISNITERLQGV 2611
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 355 TYCAGSLPAHGTHCHYPRPSNRQGSGGVPARKSP 456
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>03_02_0011 -
4909292-4909434,4909520-4909626,4910100-4910171,
4910713-4910803,4911136-4911272,4911377-4911417,
4911681-4911746,4912756-4913082
Length = 327
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 433 HQSLVGLTDADSDSGFHELEESLHN 359
HQS +DADSD G LEE+L++
Sbjct: 286 HQSTEEGSDADSDDGLPPLEENLNH 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,956,758
Number of Sequences: 37544
Number of extensions: 358717
Number of successful extensions: 1084
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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