Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0549
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 51 1e-06
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40) 31 0.84
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 29 3.4
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2) 28 5.9
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39) 28 7.8
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 224 HAEPSSSEGTEVRED-HVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVT 400
H E E E E+ + +LDEA +RL +V +D Y +++ LI Q L+QL+E V
Sbjct: 57 HDEFIEQEAKEKAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVL 116
Query: 401 IRVRQTDKALVE 436
IR R+ D +LV+
Sbjct: 117 IRCRKQDVSLVK 128
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 466 QEXDQEGCCVESRHQNFLSPDTCGGIELVAARGRIQISNTLESRLELIAQQ 618
+ D+ + H GGIEL A +G+I++ NTLESRLE++ +Q
Sbjct: 211 ERSDRRASLILVSHMRKADISGAGGIELHAKQGKIKVVNTLESRLEMLGRQ 261
>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
Length = 514
Score = 31.1 bits (67), Expect = 0.84
Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 146 ATSQDYGIL*KEGEAG*TSEEDPIFEHAEPSSSEGTEVRE---DHVRNVLDEARKRLAEV 316
AT Q+ L K A T + I + + S+ G R D V L+E R E+
Sbjct: 121 ATVQEQLKLHKAFHAELTPHQSEITQINQLGSTVGERCRHEDSDLVHAQLEEVNHRWDEL 180
Query: 317 PK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYK 469
T +L L+ FQL + + +RQTD L E L K Q D K
Sbjct: 181 CNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQGDVK 232
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 30.3 bits (65), Expect = 1.5
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Frame = +2
Query: 146 ATSQDYGIL*KEGEAG*TSEEDPIFEHAEPSSSEGTEVREDH---VRNVLDEARKRLAEV 316
AT Q+ L K A T + I + + S+ G R + V L+E R E+
Sbjct: 4967 ATVQEQLKLHKAFHAELTPHQSEITQINQLGSTVGERCRHEDSELVHAQLEEVNHRWDEL 5026
Query: 317 PK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYK 469
T +L L+ FQL + + +RQTD L E L K Q D K
Sbjct: 5027 CNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQGDVK 5078
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 209 DPIFEHAEPSSSEGTEVREDHVRNVLDEARKRLAEVPKDTKL 334
D + +HA P EG E + V+ + +RLAE K ++
Sbjct: 3124 DSLLQHAAPEDREGLEREVNGVKGAAADVERRLAEREKTEEM 3165
>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 353 TLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNXIKKDVVLKVDTRTFCRPTP 532
T +V AL ++ + + T A+ E LL A D KN K+ K TRTFC+ P
Sbjct: 379 TTVVTALRDAID---AVYLTTTLPAMQEDLL--AALDNKNPSIKEETAKFLTRTFCKSVP 433
Query: 533 -VVESSWLQP 559
V ++++P
Sbjct: 434 SQVPKAFMKP 443
>SB_11956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 403 PRPSNRQGS---GGVPARKSPNRLQEXDQEGCCVESRHQNFLSPDTCG 537
P+ + RQ + G P+ K N + QE +ES SPDT G
Sbjct: 19 PQNNKRQANQIPNGAPSHKKTNNSFDSQQERPSIESTSTTLSSPDTTG 66
>SB_13878| Best HMM Match : Vicilin_N (HMM E-Value=0.2)
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +2
Query: 230 EPSSSEGTEVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRV 409
E S+ T ++DH + L+E RK+LAE+ K EL + + Q I
Sbjct: 64 ESMSALDTLYKKDHRKEKLEERRKKLAELLLQEKTEYELAQQKLYEHWKQNAPELRQIES 123
Query: 410 RQTDKALVES 439
Q + +VES
Sbjct: 124 EQLKEHVVES 133
>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
Length = 309
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +2
Query: 236 SSSEGTEVREDHVRNVLDEAR---KRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIR 406
SS GT V +DH+RNVL + R RL+ P+D ++ + +L L+E T+
Sbjct: 78 SSYLGT-VLDDHLRNVLQQHRTISDRLSR-PQDLATDEHRTLSKTLSSLAPLVELIKTLE 135
Query: 407 VRQTDKALVESLL 445
+Q ++ + L+
Sbjct: 136 AKQKEQEELSDLI 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,788
Number of Sequences: 59808
Number of extensions: 369224
Number of successful extensions: 1109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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