Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0549
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...    76   2e-14
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    28   6.8  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 42/85 (49%), Positives = 47/85 (55%)
 Frame = +3

Query: 3   MALSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXX 182
           M +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM      
Sbjct: 1   MGISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKK 60

Query: 183 XXXXXXXXXIQSSNMLNQARLKVLK 257
                    IQ+SN LN  RL+ LK
Sbjct: 61  EKQVELQRKIQASNSLNAGRLRCLK 85



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 27/51 (52%), Positives = 38/51 (74%)
 Frame = +1

Query: 508 QNFLSPDTCGGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXLXXRKP 660
           QNFL  ++ GG+EL A  G+I++S+TLESRLELIA Q++P++R  L    P
Sbjct: 170 QNFLPSESAGGVELSARAGKIKVSSTLESRLELIANQIVPQVRTALFGPNP 220



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/64 (45%), Positives = 39/64 (60%)
 Frame = +2

Query: 254 EVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 433
           + REDH+  VLDEAR  L+ +  D   Y  +L  L++Q L QL+E  V +R R+ D  LV
Sbjct: 85  KAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQGLLQLLEKEVVLRCREKDLRLV 144

Query: 434 ESLL 445
           E LL
Sbjct: 145 EQLL 148


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 215  IFEHAEPSSSEGTEVREDHVRNVLDEARKRLAEVPKDTKLYSELLVT 355
            + EH  P  SE T+   DH+  + + A   ++ +P  T   SE  +T
Sbjct: 3395 VSEHPAPVESELTQEELDHIARITEIASMDISTLPPPTGKPSETSLT 3441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,264
Number of Sequences: 27780
Number of extensions: 269586
Number of successful extensions: 856
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)