Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0549
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.37 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   0.85 
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   7.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   7.9  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +2

Query: 428 LVESLLGKAQTDYKNXIKKDVVLKVDTR 511
           +V+++ G     +KN +++++ +K+DTR
Sbjct: 58  IVKAISGVQTVRFKNELERNITIKLDTR 85


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 311 EVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNXIKKDV 490
           E+ K  K   E ++ +I +A    +EPT    +RQT +  V  +L  A+       KK +
Sbjct: 162 EIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSL 221


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = -3

Query: 126 FRC*TPPRPSHRFLRP----FRWPL 64
           FRC  PP P  RF+ P    FR PL
Sbjct: 148 FRCIGPPTPFPRFIPPNAYRFRPPL 172


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 552 CSQGTYPDQQHS 587
           C QGT PD+ HS
Sbjct: 629 CRQGTVPDETHS 640


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 475 LILVVCLGFSEQGL 434
           L+LVVCLG + QG+
Sbjct: 5   LLLVVCLGIACQGI 18


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -3

Query: 618 LLGDQLQARLQSVAD--LDT--SPGCNQL 544
           LL DQLQ R QSV    L T  S  CN++
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKI 126


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -3

Query: 618 LLGDQLQARLQSVAD--LDT--SPGCNQL 544
           LL DQLQ R QSV    L T  S  CN++
Sbjct: 98  LLPDQLQERAQSVMGKCLPTSGSDNCNKI 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,587
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)