Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0549
(662 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATP... 65 3e-11
At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putati... 60 1e-09
At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putati... 48 6e-06
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 31 0.68
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom... 30 1.2
At4g20700.1 68417.m03008 hypothetical protein 29 3.6
At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190... 28 6.4
At5g07910.1 68418.m00914 leucine-rich repeat family protein cont... 27 8.4
>At4g11150.1 68417.m01807 vacuolar ATP synthase subunit E / V-ATPase
E subunit / vacuolar proton pump E subunit (VATE)
identical to SP|Q39258 Vacuolar ATP synthase subunit E
(EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump
E subunit) {Arabidopsis thaliana}
Length = 230
Score = 65.3 bits (152), Expect = 3e-11
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +2
Query: 254 EVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 433
+ ++D V + D+A K L V +D Y +LL LIVQ L +L EP+V +R R+ D LV
Sbjct: 83 QAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLV 142
Query: 434 ESLLGKAQTDYKNXIKKDV-VLKVDTRTFCRPTP 532
E++L A+ +Y K + VDT+ F P P
Sbjct: 143 EAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPP 176
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 535 GGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXL 645
GG+ L + G+I NTL++RL++ + LP IR L
Sbjct: 188 GGVVLASRDGKIVCENTLDARLDVAFRMKLPVIRKSL 224
>At3g08560.1 68416.m00993 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 235
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +2
Query: 254 EVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 433
+ ++D V + D A K L V D Y +LL +LI+++L +L EP+V +R R+ DK +V
Sbjct: 83 QAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVV 142
Query: 434 ESLLGKAQTDYKNXIK-KDVVLKVDTRTFCRPTP 532
ES++ A+ Y K + +D + F P P
Sbjct: 143 ESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPP 176
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +3
Query: 9 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 188
++DADV KQI+ M+ FI Q FNIE+ +L++ + K+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60
Query: 189 XXXXXXXIQSSNMLNQARLKVLK 257
I S LN +R+K L+
Sbjct: 61 QVDIRKRIDYSTQLNASRIKYLQ 83
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +1
Query: 523 PDTCGGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXL 645
P GG+ L + G+I NTL++RL++ +Q LP+IR L
Sbjct: 186 PHCSGGVVLASQDGKIVCENTLDARLDVAFRQKLPQIRTRL 226
>At1g64200.1 68414.m07273 vacuolar ATP synthase subunit E, putative
/ V-ATPase E subunit, putative / vacuolar proton pump E
subunit, putative similar to SP|Q39258 Vacuolar ATP
synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit)
(Vacuolar proton pump E subunit) {Arabidopsis thaliana};
contains Pfam profile PF01991: ATP synthase (E/31 kDa)
subunit
Length = 237
Score = 48.0 bits (109), Expect = 6e-06
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Frame = +2
Query: 254 EVREDHVRNVLDEARKRLAEVPKDTKL------YSELLVTLIVQALFQLMEPTVTIRVRQ 415
+ ++D V + +EA K+L +V + Y LL LIVQ L +L EP V +R R+
Sbjct: 83 QAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCRE 142
Query: 416 TDKALVESLLGKAQTDYKNXIKKDV-VLKVDTRTFCRPTP 532
D +VES+L A +Y K + VD F P P
Sbjct: 143 EDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPPAP 182
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 535 GGIELVAARGRIQISNTLESRLELIAQQLLPEIRNXL 645
GG+ L + G+I NTL++RLE+ + LPEIR L
Sbjct: 194 GGVVLASRDGKIVCENTLDARLEVAFRNKLPEIRKSL 230
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 319 KGHQTVLRAAGHTYC-AGSLPAHGTHCHYPRPSNRQGSGGVPARKSPN 459
+GH+ V + +C G+ G+ C +P G+G PAR + N
Sbjct: 1613 RGHRVVYSRSSRFFCDCGAGGVRGSSCQCLKPRKYNGNGSAPARGTNN 1660
>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 1027
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -2
Query: 553 QPARFHHRCRATKSSGVDFQHNILLDLILVVCLGFSE--QGLHQSLVGLTDADSD 395
+P H CR QH L D++ V CL F E LH+ G TD D
Sbjct: 543 EPMVMHRACRQISH----VQHGSLKDVVAVDCLDFCEVKVNLHEFFTGYTDGRYD 593
>At4g20700.1 68417.m03008 hypothetical protein
Length = 529
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 203 EEDPIFEHAEPSSSEGTEVREDHVRNVLDEARKRLAE 313
E+ + E +PS SEG ++ E R++LD+ +R+ E
Sbjct: 111 EKRAVSETPQPSLSEGQQIAEATRRSLLDQVGRRVFE 147
>At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190:
Protein of unknown function, DUF255
Length = 818
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 224 HAEPSSSEGTEVREDHVRNVLDEARK 301
H +PSSS+ E E+H NV + A+K
Sbjct: 760 HIDPSSSDEIEFWEEHNSNVAEMAKK 785
>At5g07910.1 68418.m00914 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 262
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 496 QHNILLDLILVVCLGFSEQGLHQSLVGLTDADSDSGFHELEESLHNKCDQQL 341
Q N + D +L+ C LH + + + G+ + EE K D+Q+
Sbjct: 194 QVNQIPDGLLIHCKSLQNLSLHNNPISMDQFQLMEGYQDFEERRKKKFDKQI 245
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,709
Number of Sequences: 28952
Number of extensions: 257185
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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