Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0547
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 61 2e-10
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 32 0.063
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 32 0.063
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 28 1.0
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.0
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 27 3.1
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 5.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 26 5.5
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.3
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 7.3
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 9.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.6
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 433
+A+S +F +P + K LVVQ+ V E+ ++CGG YLK+ + +M Y IMFG
Sbjct: 101 HAISYEFDEPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFG 159
Query: 434 PDICGPGTKKVHVIFSYK 487
PD CG +VH IF +K
Sbjct: 160 PDKCGV-NDRVHFIFKHK 176
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 538 THLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPP 648
T+LYTLIVKPD T+EV I+ + V G L +DF+PP
Sbjct: 201 TNLYTLIVKPDQTFEVRINGDVVRQGSL--FYDFIPP 235
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 32.3 bits (70), Expect = 0.063
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 223 SSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHE-SSGNFSSKNTSQFIEDNASKLTTTST 47
S+S SL P VN + S + ++ L S + S+ NF+S ++S + + S L+T ST
Sbjct: 483 STSSSLVVIPPVNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPST 542
Query: 46 T 44
T
Sbjct: 543 T 543
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 32.3 bits (70), Expect = 0.063
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = +2
Query: 302 PLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFS 481
P+V+ F VK + CG Y+ + + K++ E P I FG CG I S
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161
Query: 482 YKGK 493
Y GK
Sbjct: 162 YDGK 165
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -2
Query: 307 QGFTLITERFELTGESIDLASSEVXKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSH 128
+ + L+ R SID S + LS+ LK +++ FP SFP +Y + +
Sbjct: 116 KSYCLVDLRMRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYDMCILN 175
Query: 127 ESS 119
+SS
Sbjct: 176 DSS 178
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 187 NLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTT 56
N N F + + S +SGNFS T Q DN S +T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 26.6 bits (56), Expect = 3.1
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 1/136 (0%)
Frame = -2
Query: 478 EDYVYLLGSRTTNVRAEHNLIWSLSVHVLL-LQFAVKDLEVSASTVNVLFMFDSELDYQG 302
ED V G + + HNL+ S+ L ++D V T N+ +++LD+
Sbjct: 154 EDEVINEGLESEIDGSSHNLLDSILQKCLASTSVLMQDALVYIGTANMSTRLEAKLDFMS 213
Query: 301 FTLITERFELTGESIDLASSEVXKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHES 122
F+ + +I+ + + +P+S S + + P + S S + ++
Sbjct: 214 FSSVKSNSTSRLLNINGITVSMVRPISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDL 273
Query: 121 SGNFSSKNTSQFIEDN 74
S + + N S I N
Sbjct: 274 SPSQVTLNESSIISSN 289
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 105 EEKFPDDSWESNWVYS 152
EEKFPD +W +W S
Sbjct: 251 EEKFPDIAWRVSWSLS 266
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +3
Query: 108 EKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDD 224
+ F +D + +W EH K ++ + + FS+ +D+
Sbjct: 49 QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGDDE 87
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 150 CTPNCFPTNHQETSPQRIHHNLSKIMPAS*Q 58
C P FP N+QE H+ I AS Q
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQ 821
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = -2
Query: 250 ASSEVXKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 71
+SS LSS S + + + ++F S ++ SH SS + SS ++ + ++
Sbjct: 395 SSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTASS 454
Query: 70 SKLTTTSTTAF 38
S L T+S+ +
Sbjct: 455 SSLLTSSSHTY 465
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = -3
Query: 615 ARFNFLIVNEDFIGVVRFHNQSVQMCVDIIFAADIFLMRWFLP 487
A+F +L++NE+ I +++ + + ++ + DI + +LP
Sbjct: 4327 AKFPYLVLNEEIIRMLKSYIKKFRLTLSSAMVPDILVPVSYLP 4369
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.3
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Frame = -2
Query: 274 LTGESIDLASSEVXKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNT 95
+TG S +S PL+S+ + + S + + + ESS +S+ T
Sbjct: 625 ITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTT 684
Query: 94 SQFIEDNASKLT---TTSTTAFIFDSQYHLLQQN 2
S T +T TT+FI S + N
Sbjct: 685 SSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNN 718
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 254 VYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHG 406
+Y +SRK P L + F K DC G L+V D L+ +G
Sbjct: 959 LYEVSRKINPLHQASTRLAIAFPDKRLLQYDC--GKLQVLDRLLKDLVSNG 1007
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 207 SDPEDDKGLXTSEDARSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 365
S+PE++K L T E +++ SPV+ + + N S++ S ++ + T+
Sbjct: 486 SEPENEKKLKTEETSKTDDSPVTDAKPDVTSNGEPSTATSESKDSVLEPSSTT 538
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 132 PTNHQETS---PQRIHHNLSKIMPAS*QRPVQQLSFSIHSTTF 13
PT H T+ P H N + +P + + + ++ ++TTF
Sbjct: 136 PTTHVNTTTVVPPTTHANTTSFVPTTTESSIHPITTGFYNTTF 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,570
Number of Sequences: 5004
Number of extensions: 61636
Number of successful extensions: 207
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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