Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0547
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   1e-17
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                47   2e-05
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.051
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   29   2.5  
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_5367| Best HMM Match : wnt (HMM E-Value=0)                          29   4.4  
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)           28   5.8  
SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)               28   7.7  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 40/55 (72%), Positives = 45/55 (81%), Gaps = 5/55 (9%)
 Frame = +1

Query: 502 HQKDIRC-----KDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPK 651
           H+++I C     KDD  THLYTLIV+PDNTYEV IDNEKVESG+LE DWDFLPPK
Sbjct: 835 HEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWDFLPPK 889



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/53 (60%), Positives = 36/53 (67%)
 Frame = +3

Query: 96  VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLXTSEDAR 254
           V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG+ TSEDA+
Sbjct: 756 VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAK 808



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 28/38 (73%), Positives = 33/38 (86%), Gaps = 1/38 (2%)
 Frame = +2

Query: 257 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 367
           Y +S KF KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 810 YGISAKFEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/35 (57%), Positives = 24/35 (68%)
 Frame = +1

Query: 526 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEAD 630
           D   THL+TL+V+PDNT+EV ID E V  G L  D
Sbjct: 87  DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLED 121



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 377 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKISAAK 526
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++  A K
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGE-DRKLHFIFRHKNPKNGTIEEKHAKK 77


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 354 PPQSMSCSCLTVNWTTKGLPSLLNG 280
           P +  SC CL V W T GLP L++G
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHG 453


>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 237 TSEDARSMLSPVSSNRSVMRVNPW*SSSLSNMNKTLTVEADTS 365
           T+ DAR M  P +S     R++P  SSS S+ + + + + DT+
Sbjct: 191 TAADAREMADPATSTPWTFRMSPASSSSSSSSSSSSSSQEDTT 233


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 511 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 636
           D+ CKDD         V  D T E L+D+ +V+S  L  D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526


>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 522 AADIFLMRWFLPL*LKITCTFLVPGPQMSGPNIISYGV 409
           AAD   +RW   L  +IT   +V G + SGP I+  GV
Sbjct: 567 AADFSFVRWVQSLAERITSRVVVEGQKRSGP-IVDLGV 603


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 158 VLTVHPIAFPRIIRKLLLKEYI 93
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
          Length = 367

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 616 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 518
           +++Q + C+   H CC+V    C      H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367


>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
          Length = 1873

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 93   DVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLXTSEDARSMLSPV 272
            +VF   +  D +  + +++ E  G   G   L AG     P   +G    ED+ SM   +
Sbjct: 950  EVFTIGQVYDHTTPTAYIFHEWDGDALGGAPLRAGATEVYPRGSRGNTMGEDSSSMYVTL 1009

Query: 273  SSN 281
            SSN
Sbjct: 1010 SSN 1012


>SB_14578| Best HMM Match : Gal_Lectin (HMM E-Value=0.72)
          Length = 502

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -2

Query: 292 ITERFELTGESIDLASSEVXKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGN 113
           +TE      +S   AS+     +SSSGS+ ++  V L  P       L T +     SGN
Sbjct: 104 VTESVSSIFKSSSAASASASASVSSSGSILSYGKV-LEIPGPAISGGLVTSMTGSSVSGN 162

Query: 112 FSSKN 98
               N
Sbjct: 163 LGKTN 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,575,785
Number of Sequences: 59808
Number of extensions: 483544
Number of successful extensions: 1253
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)