Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0547
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   127   6e-30
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   127   6e-30
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    68   7e-12
U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain (pr...    31   0.72 
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   5.1  
U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical p...    27   8.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   8.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   8.9  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  127 bits (307), Expect = 6e-30
 Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 2/101 (1%)
 Frame = +2

Query: 257 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 433
           Y+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFG
Sbjct: 70  YSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFG 129

Query: 434 PDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL 553
           PDICGP T++VHVI +YKG+N LIKK I+      TH+ TL
Sbjct: 130 PDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTL 169



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 31/50 (62%), Positives = 36/50 (72%)
 Frame = +1

Query: 505 QKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKK 654
           +K+I CK D  THLYTLI+  DNTYEV ID E  ++G LE DWD LP KK
Sbjct: 153 KKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKK 202



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +3

Query: 84  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLXTSEDAR 254
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G+ TS+DA+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAK 68


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  127 bits (307), Expect = 6e-30
 Identities = 61/101 (60%), Positives = 75/101 (74%), Gaps = 2/101 (1%)
 Frame = +2

Query: 257 YALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFG 433
           Y+ + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFG
Sbjct: 70  YSRAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFG 129

Query: 434 PDICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL 553
           PDICGP T++VHVI +YKG+N LIKK I+      TH+ TL
Sbjct: 130 PDICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTL 169



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 31/50 (62%), Positives = 36/50 (72%)
 Frame = +1

Query: 505 QKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLPPKK 654
           +K+I CK D  THLYTLI+  DNTYEV ID E  ++G LE DWD LP KK
Sbjct: 153 KKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKK 202



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +3

Query: 84  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLXTSEDAR 254
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G+ TS+DA+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAK 68


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
 Frame = +2

Query: 257 YALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKLEQKDMHGETPYEIM 427
           +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + +  +   +T Y IM
Sbjct: 121 HAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANFQDKTAYTIM 180

Query: 428 FGPDICGPGTKKVHVIFSYK 487
           FGPD CG  T KVH+IF YK
Sbjct: 181 FGPDKCG-ATGKVHLIFRYK 199



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 526 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD--FLPPKK 654
           DD  THL+TL+VKP   Y V +D + +  G++ +D      PPK+
Sbjct: 223 DDHNTHLFTLVVKPTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQ 267


>U80451-1|AAB37835.1|  591|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 9 protein.
          Length = 591

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 286 ERFELTGESIDLASSEVXKPLSSSGSLKNFPAVNLNFPNSFPGCSLYTQ 140
           E   +T  S+ L +  V   +S    L  +  ++ +F  SFP C LYT+
Sbjct: 349 ENDSITEMSVQLTTYGVNPAISMDRRLSRYSRISCSFHFSFPSCLLYTK 397


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 535 YTHLYTLIVKPDN-TYEVLIDNEKVESGDLEADWDFLPP 648
           +TH +TL VKP N  Y+   DN+ ++    E    F  P
Sbjct: 23  HTHKWTLFVKPGNRDYDEFPDNKLIQKVKFEIHESFAQP 61


>U58751-10|AAB00661.1|  205|Caenorhabditis elegans Hypothetical
           protein C07G1.7 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 370 DLEVSASTVNVLFMFDSELDYQGFTLITERFELTGESI 257
           D E     + +L   D ++DY+ F  + E+F   G+S+
Sbjct: 130 DRETCEENIKILQREDRDVDYREFLTMAEKFNEEGQSL 167


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 505   QKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 612
             +K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12861 RKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 505   QKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 612
             +K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12861 RKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,069,958
Number of Sequences: 27780
Number of extensions: 362238
Number of successful extensions: 1079
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)