Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0546
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 151 8e-38
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 87 2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 3e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 4e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 5e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 47 2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 6e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 5e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 1.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 9.4
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 151 bits (365), Expect = 8e-38
Identities = 70/85 (82%), Positives = 75/85 (88%)
Frame = +3
Query: 15 LMCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIG 194
+ CDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIG
Sbjct: 283 MKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIG 342
Query: 195 GSIXASLSTFQQMXISKQEYTSLVP 269
GSI ASLSTFQQM ISKQEY P
Sbjct: 343 GSILASLSTFQQMWISKQEYDESGP 367
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 257 ESGPSIVHRKCF 292
ESGP IV+RKCF
Sbjct: 364 ESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/80 (46%), Positives = 57/80 (71%)
Frame = +3
Query: 15 LMCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIG 194
L+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+G
Sbjct: 288 LLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLG 347
Query: 195 GSIXASLSTFQQMXISKQEY 254
GSI ASLSTF+++ I+ +EY
Sbjct: 348 GSILASLSTFRRLLITSEEY 367
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 76.2 bits (179), Expect = 3e-15
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Frame = +3
Query: 21 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWI 191
CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+
Sbjct: 338 CDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWL 396
Query: 192 GGSIXASLSTFQQMXISKQEY 254
GGSI +SL TF Q+ IS+QEY
Sbjct: 397 GGSILSSLGTFHQLWISRQEY 417
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.9 bits (161), Expect = 4e-13
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 LMCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVW 188
L CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +VW
Sbjct: 333 LACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVW 392
Query: 189 IGGSIXASLSTFQQMXISKQEY 254
GGSI ASL FQ + +SKQEY
Sbjct: 393 FGGSILASLDNFQHLWVSKQEY 414
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.8 bits (136), Expect = 5e-10
Identities = 36/89 (40%), Positives = 54/89 (60%), Gaps = 12/89 (13%)
Frame = +3
Query: 24 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPE 170
DVDIRK LY VLSGG++MY G+ R++KEI L P+ + K+KI P
Sbjct: 286 DVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPR 345
Query: 171 RKYSVWIGGSIXAS-LSTFQQMXISKQEY 254
R+++V+IGG++ A ++ M +SK E+
Sbjct: 346 RRHAVFIGGAVLADIMAQNDHMWVSKAEW 374
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 46.8 bits (106), Expect = 2e-06
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Frame = +3
Query: 27 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MKIKIIAP 164
+D+RK LY N VLSGG+T++ +R+Q+++ + + + +I+
Sbjct: 320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISH 379
Query: 165 PERKYSVWIGGSIXASLSTFQQMXISKQEY 254
++ +VW GGS+ A F +K +Y
Sbjct: 380 KRQRNAVWFGGSLLAQTPEFGSYCHTKADY 409
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.9 bits (94), Expect = 6e-05
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +3
Query: 36 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIXASL 215
++ L +N +++GG PG+ R+++E+T++ P I + W G S +
Sbjct: 631 QQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVT 690
Query: 216 STFQQMXISKQEYTSLVP 269
F+ ++++EY P
Sbjct: 691 EKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 5e-04
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +3
Query: 30 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIXA 209
+I+ L N V GG +PG R+ E+ +LAP+ ++K+ P + W S
Sbjct: 314 NIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKAS-HM 372
Query: 210 SLSTFQQMXISKQEYT 257
L + I++ EY+
Sbjct: 373 PLEHWNANKITRSEYS 388
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 39 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSIXA 209
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 210 SLSTFQQMXISKQEYTSL 263
+ ++ I ++ L
Sbjct: 587 RIRIVSELWIKNSDWKML 604
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 231 MXISKQEYTSLVPPLYTGS-ASKR*DFKL*CPTAEPQEGGS 350
+ I+K YT L P LYTGS S+ ++ L E QE S
Sbjct: 125 LEINKNVYTDLNPELYTGSTVSQSSEYVLVIELLETQERSS 165
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 499 LGLVTLINKNLCQKKNGNNNIPFVL 425
L LV ++++N+C + + +PFV+
Sbjct: 453 LSLVQILSRNICDESKLDTVLPFVM 477
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 534 LYRYINLFYKKFWG 493
L+RY+N + +FWG
Sbjct: 461 LFRYVNKYTSQFWG 474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,037,207
Number of Sequences: 5004
Number of extensions: 37851
Number of successful extensions: 104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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