Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0545
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   2.8  
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    25   4.9  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 252  IAATPXSMPXAXAPAPXPRVIWWSVSAPDGS 160
            +AA P  +P    P P P V    V AP G+
Sbjct: 1128 VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -2

Query: 140 LQHSTQHYNGYVDDHTL--DTRGSFRGTQRPNASAMRL 33
           + HS  H  GY DDH +  D +   +G +R     + L
Sbjct: 25  VSHSKSHLEGYDDDHKIAFDPKDLEQGAEREKQPRLTL 62


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 155 RHTPRLQHSTQHYNGYVDDHTLDTRGSFRGTQRP 54
           RHT    HST H++  VD H L +  S      P
Sbjct: 339 RHT---NHSTDHHDDTVDSHLLHSFVSAENANEP 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,580
Number of Sequences: 5004
Number of extensions: 21755
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)