Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0545
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 27   8.8  
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 50  HSDVVYRESFRECQVCDHRH 109
           H DV  R    ECQ C HRH
Sbjct: 628 HKDVEKRSKCDECQKCFHRH 647


>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -2

Query: 221 QXHRRRCLA*SGGRSVPPTDPWRHTPRLQHSTQHYNGYVDDHTLDTRG 78
           Q +RRR    SG  S PP D  +H P+ +      NG   DH  D  G
Sbjct: 746 QQNRRRNQNKSGRGSKPPRDNPQHDPQYKGMNGTSNGV--DHVTDLNG 791


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
 Frame = -2

Query: 185 GRSVPPTDPWRHTPRLQH-------STQHYNGYVDDHT 93
           GR   P++PW H P   +        + HYNGY+ +++
Sbjct: 68  GRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLPNYS 105


>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
 Frame = -2

Query: 185 GRSVPPTDPWRHTPRLQH-------STQHYNGYVDDHT 93
           GR   P++PW H P   +        + HYNGY+ +++
Sbjct: 112 GRRQVPSEPWYHHPDSGYPSSSPTSKSNHYNGYLPNYS 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,256
Number of Sequences: 59808
Number of extensions: 220275
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)