Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0545
         (504 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC022094-1|AAH22094.2|  400|Homo sapiens USP30 protein protein.        29   7.0  
BC004868-1|AAH04868.1|  508|Homo sapiens ubiquitin specific pept...    29   7.0  
AL137724-1|CAB70894.1|  439|Homo sapiens hypothetical protein pr...    29   7.0  
AK027820-1|BAB55392.1|  486|Homo sapiens protein ( Homo sapiens ...    29   7.0  
AJ586136-1|CAE51936.1|  517|Homo sapiens ubiquitin-specific prot...    29   7.0  
AC078834-1|AAS01989.1|  439|Homo sapiens unknown protein.              29   7.0  

>BC022094-1|AAH22094.2|  400|Homo sapiens USP30 protein protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -3

Query: 232 HAXRXRTGAXASRDLVVGQCPRRIRGGTLRGCSTQHNTTTVMSMITHLTLAEAFAVHNVR 53
           H       + + RD+V   C +    GTL G   +H  TT +  +    L +   +H  R
Sbjct: 151 HCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKVEHQRTTFVKQLKLGKLPQCLCIHLQR 210

Query: 52  M 50
           +
Sbjct: 211 L 211


>BC004868-1|AAH04868.1|  508|Homo sapiens ubiquitin specific
           peptidase 30 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -3

Query: 232 HAXRXRTGAXASRDLVVGQCPRRIRGGTLRGCSTQHNTTTVMSMITHLTLAEAFAVHNVR 53
           H       + + RD+V   C +    GTL G   +H  TT +  +    L +   +H  R
Sbjct: 259 HCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKVEHQRTTFVKQLKLGKLPQCLCIHLQR 318

Query: 52  M 50
           +
Sbjct: 319 L 319


>AL137724-1|CAB70894.1|  439|Homo sapiens hypothetical protein
           protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -2

Query: 173 PPTDPWRHTPRLQHSTQHYNGYVDDHTL--DTRGSFR---GTQRPNASAMRLKLPSR 18
           PP  P +H P+ QH   H++  V    L   ++  FR    T +P AS+ R++ P R
Sbjct: 66  PPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQR 122


>AK027820-1|BAB55392.1|  486|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14914 fis, clone PLACE1006829, weakly similar to
           UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (EC 3.1.2.15).
           ).
          Length = 486

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -3

Query: 232 HAXRXRTGAXASRDLVVGQCPRRIRGGTLRGCSTQHNTTTVMSMITHLTLAEAFAVHNVR 53
           H       + + RD+V   C +    GTL G   +H  TT +  +    L +   +H  R
Sbjct: 237 HCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKVEHQRTTFVKQLKLGKLPQCLCIHLQR 296

Query: 52  M 50
           +
Sbjct: 297 L 297


>AJ586136-1|CAE51936.1|  517|Homo sapiens ubiquitin-specific
           proteinase 30 protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -3

Query: 232 HAXRXRTGAXASRDLVVGQCPRRIRGGTLRGCSTQHNTTTVMSMITHLTLAEAFAVHNVR 53
           H       + + RD+V   C +    GTL G   +H  TT +  +    L +   +H  R
Sbjct: 268 HCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKVEHQRTTFVKQLKLGKLPQCLCIHLQR 327

Query: 52  M 50
           +
Sbjct: 328 L 328


>AC078834-1|AAS01989.1|  439|Homo sapiens unknown protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -2

Query: 173 PPTDPWRHTPRLQHSTQHYNGYVDDHTL--DTRGSFR---GTQRPNASAMRLKLPSR 18
           PP  P +H P+ QH   H++  V    L   ++  FR    T +P AS+ R++ P R
Sbjct: 66  PPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQR 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,043,656
Number of Sequences: 237096
Number of extensions: 943285
Number of successful extensions: 6689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6689
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)