Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0545
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54630.1 68416.m06044 expressed protein weak similarity to re...    27   5.4  
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ...    27   9.5  
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ...    27   9.5  
At1g32120.1 68414.m03952 expressed protein contains Pfam profile...    27   9.5  

>At3g54630.1 68416.m06044 expressed protein weak similarity to
           retinoblastoma-associated protein HEC [Homo sapiens]
           GI:2501873
          Length = 568

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 178 QCPRRIRGGTLRGCSTQHNTTTVMSMITHLTLAEAFAVHNV 56
           +CP +I   +L+  +T HN  TV++++  L     F  H V
Sbjct: 124 KCPFKITKSSLKAPNTPHNWPTVLAVVHWLAELARFHQHLV 164


>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 113 GYVDDHTLDTRGSFRGTQRPNASAMRLKLPSRPP 12
           G   D   DT G+FR + +  +S    +LP R P
Sbjct: 405 GIKKDENADTFGAFRSSTKEKSSLSEGRLPGRRP 438


>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2a
           GI:3386546 from [Arabidopsis thaliana]
          Length = 457

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 113 GYVDDHTLDTRGSFRGTQRPNASAMRLKLPSRPP 12
           G   D   DT G+FR + +  +S    +LP R P
Sbjct: 405 GIKKDENADTFGAFRSSTKEKSSLSEGRLPGRRP 438


>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 1206

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 155 RHTPRLQHSTQHYNGYVDDHTLDTRGSFRGTQRPNASA-MRLKLPSRPPR 9
           R +PR   S    +G   D   D +G+ RG+    +   +  +LPS P R
Sbjct: 616 RSSPRSTKSPDRSSGRAADDVKDLKGALRGSGGTKSQGHVTFQLPSSPGR 665


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,350,501
Number of Sequences: 28952
Number of extensions: 135010
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)