Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0542
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   5.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.7  

>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 494 PSLSGAPAVLLRAAGPGLRDDLPPVEGLKDSS 589
           PS+S A    +  +G  L   LPP++G  D S
Sbjct: 194 PSVSPASLPSISPSGGFLPKWLPPLQGFSDPS 225


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   GNREDAVQNEYLPARAILRR 63
           G  +DAVQ+E  P  + LRR
Sbjct: 104 GMNKDAVQHERGPRNSTLRR 123


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   GNREDAVQNEYLPARAILRR 63
           G  +DAVQ+E  P  + LRR
Sbjct: 104 GMNKDAVQHERGPRNSTLRR 123


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 10  REDAVQNEYLPARAIL 57
           RED   +EYLP  A++
Sbjct: 374 REDPTNDEYLPGCAMV 389


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 6   KSRRCCSERISP 41
           +SRRCC   ++P
Sbjct: 611 RSRRCCYHAVAP 622


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 6   KSRRCCSERISP 41
           +SRRCC   ++P
Sbjct: 503 RSRRCCYHAVAP 514


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 494 PSLSGAPAVLLRAAGPGLRDDLPP 565
           PSL G P  +L A    L +  PP
Sbjct: 30  PSLRGTPLAMLAAQCNKLSNKSPP 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,071
Number of Sequences: 336
Number of extensions: 2958
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)