Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0542
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    74   2e-14
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    28   1.3  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   1.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.4  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.4  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   7.1  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.1  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 36/89 (40%), Positives = 54/89 (60%)
 Frame = +1

Query: 259 HIDSIHRLVHLAGINISVHALALLFQISDASTGTSDRYYSALYKKLTNSDILNTTHTALL 438
           H++++  + H A  N SV  L L+FQ S +    SDRYY +LY+ L +  +  ++  +L 
Sbjct: 394 HMNTLFAITHTASFNTSVQVLMLIFQASASRDFISDRYYKSLYESLLDPRLTTSSKQSLY 453

Query: 439 FSLVYKSLKQDKNIPRVVAFVKRRSSCAA 525
            +L+YKSL  D NIPRV AF+KR    +A
Sbjct: 454 LNLLYKSLIIDNNIPRVRAFIKRMVQVSA 482



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +2

Query: 5   EIEKMLFRTNISPRAQYYGVCFLNQFYLGKDDSKVAESLIRIYFSFF 145
           EIE+ +F  + S  + YY +  LNQ  L      VA  LI IYF FF
Sbjct: 270 EIERFIFAPSTSRTSCYYTLITLNQTVLTHKQVDVANLLIEIYFVFF 316



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 14/21 (66%), Positives = 20/21 (95%)
 Frame = +2

Query: 170 IDSRLMSAILTGVKRAYPFAD 232
           ++SR++SA+LTGV RAYPFA+
Sbjct: 365 VNSRVISAVLTGVNRAYPFAE 385


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 277 RLVHLAGINISVHALALLFQIS 342
           R VH+ GI   +HA+A LF I+
Sbjct: 137 RYVHITGIGFVIHAIAALFVIT 158


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 321 GSAVPNQRRLHRDQRPVLLGLIQEADELRHIEHYAHGSALLARL 452
           GS   N R L + QRP+  G+IQ   ++  I  Y +    L  L
Sbjct: 59  GSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTL 102


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 347 ASLIWNSRARACTDMLMP 294
           +SL+W +R   CTD  +P
Sbjct: 834 SSLLWKARTEECTDQYVP 851


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 68  FLNQFYLGKDDSKVAESLIRIYFSFFKASIKKGEIDSRLMSAILTGVKRAY 220
           FLN+F+      KV+     + F   + ++++G  DSR      +GVK+ +
Sbjct: 267 FLNEFFTLNTHQKVSSLNYHLAFQQARINVQQGFSDSR-AKRYFSGVKQVF 316


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 163 LLNRSLEEREVYSYQTLRYF-GIVFTQIELIQET 65
           LL  S +E+ VYS+QT +   G+ FT  EL   T
Sbjct: 394 LLQPSSKEQAVYSFQTQKNSKGLQFTSNELTNPT 427


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 237 SGSRRLGPHRLDPPACAPGRH 299
           +G+ R  P R+DP A APG H
Sbjct: 651 AGTGRGIPVRVDPTALAPGHH 671


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,908
Number of Sequences: 5004
Number of extensions: 48844
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)