Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0542
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)                   68   6e-12
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               68   6e-12
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                32   0.46 
SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)                   29   2.5  
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)                    28   5.7  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   5.7  
SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_40185| Best HMM Match : WD40 (HMM E-Value=0)                        28   7.5  

>SB_14048| Best HMM Match : CBF (HMM E-Value=9.6e-17)
          Length = 573

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 28/79 (35%), Positives = 51/79 (64%)
 Frame = +1

Query: 253 SDHIDSIHRLVHLAGINISVHALALLFQISDASTGTSDRYYSALYKKLTNSDILNTTHTA 432
           ++  D+I R+VH++  N SV AL LL Q+  +    SDR+Y ALY K+ + ++  ++  A
Sbjct: 272 NEQFDTIFRVVHISSFNTSVQALMLLLQVMSSRQSVSDRFYQALYTKMLDPNLCTSSKQA 331

Query: 433 LLFSLVYKSLKQDKNIPRV 489
           +  ++++KS+K D ++ RV
Sbjct: 332 MFLNILFKSMKTDTSLARV 350


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 28/79 (35%), Positives = 51/79 (64%)
 Frame = +1

Query: 253 SDHIDSIHRLVHLAGINISVHALALLFQISDASTGTSDRYYSALYKKLTNSDILNTTHTA 432
           ++  D+I R+VH++  N SV AL LL Q+  +    SDR+Y ALY K+ + ++  ++  A
Sbjct: 217 NEQFDTIFRVVHISSFNTSVQALMLLLQVMSSRQSVSDRFYQALYTKMLDPNLCTSSKQA 276

Query: 433 LLFSLVYKSLKQDKNIPRV 489
           +  ++++KS+K D ++ RV
Sbjct: 277 MFLNILFKSMKTDTSLARV 295



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 11/24 (45%), Positives = 22/24 (91%)
 Frame = +2

Query: 155 IKKGEIDSRLMSAILTGVKRAYPF 226
           + KGE++++++SA+LTG+ RA+P+
Sbjct: 185 VAKGEVETKMLSALLTGINRAFPY 208


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
 Frame = +1

Query: 178  PANVSDIDGRQTRLPVRR*GAAHGDSDHIDSIHRLVHLAGINISVHALALLFQISDASTG 357
            PANV  +D  + R+  RR         +I+SIHR+ HL  +  +      LF  S     
Sbjct: 1376 PANVPMLDTCELRVLARR--------RYINSIHRIAHLYKLKQNPSVKFALF-TSSHDVA 1426

Query: 358  TSDRYYSALYK-----KLTNSDILNTTHTALLFSLVYKSLKQDKNIPRVVAFVKRRSSCA 522
            +  R+YS ++       L +  IL T   A L +L+    +Q+++  +V+  +  RS   
Sbjct: 1427 SHSRHYSTIFPGVGGVLLPDDGILRTCDPAELEALLMLIEEQNEHHQKVLWVMNIRSLAY 1486

Query: 523  ATCCRPRP 546
                  RP
Sbjct: 1487 KKLASTRP 1494


>SB_58810| Best HMM Match : DUF1613 (HMM E-Value=1.8)
          Length = 989

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 505 RRSSCAATCCRPRPAG*SSSCRRSEGLLQEGGHQTCMEQNG 627
           ++ +CAA   RP+       C   EG     GH+ CM+  G
Sbjct: 635 KQCTCAAEGRRPQDRRGHKGCMGDEGTRARRGHKGCMDDEG 675


>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
          Length = 293

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 337 ISDASTGTSDRYYSALYKKLTNSDILNTTH--TALLFSLVY 453
           ++ +  G +D + S LY+ +   ++L  TH  T+LL+ LVY
Sbjct: 57  LARSCNGHTDIHTSLLYRLVYTGEVLQWTHRLTSLLYRLVY 97


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 216 PTRSPIRSGSRRLGPHRLDPPACAPGRHQHIRARSGSAVP 335
           P+ SP+R         RL PP  +P  ++++R +S S  P
Sbjct: 222 PSWSPVRQSPFNKTHRRLSPPRRSPSPYRNMRIKSRSPSP 261


>SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 381 LIQEADELRHIEHYAHGSALLARLQVAEAGQEHSQGGG 494
           ++QEA +LR++E+       LAR +  E G+E+++  G
Sbjct: 54  ILQEARKLRYLENQKIEKQRLARREEEEEGRENTEEDG 91


>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 503

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  RRCCSERISPRARNTTACVS 71
           RR CS R  PR R  TAC S
Sbjct: 434 RRACSARTPPRRRPFTACTS 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,173
Number of Sequences: 59808
Number of extensions: 404885
Number of successful extensions: 1279
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)