Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0542
         (649 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    29   0.096
CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal pe...    24   4.8  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   6.3  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   6.3  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 29.5 bits (63), Expect = 0.096
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 213  APTRSPIRSGSRRLGPHRLDPPACAPGRHQHIRARSGSAVPNQRRLHRDQRPVLLGLIQE 392
            +PT+     G         DP   A G  +++    G   PN+  + R+   VL G + E
Sbjct: 885  SPTKEDATGGFSTTTTSPKDPEEAAVGGGEYVEISKGRKTPNELTVRRNLATVLSGNLNE 944

Query: 393  ADE 401
              E
Sbjct: 945  ETE 947


>CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal
           peptidase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 440 KSRAVCVVFNMSEFVSFL 387
           KSRAVC ++ +SEF  F+
Sbjct: 230 KSRAVCRLWPLSEFKLFI 247


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 482 PGWWPSLSGAPAVLLRAAGP 541
           PG  P + GAP +L+   GP
Sbjct: 89  PGMIPGMPGAPPLLMGPNGP 108


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 593 SWRSPSDLRQEEDHPAGLGRQHVAAQLERRLTKATTLGMFLSCFS 459
           SW+S ++  +E+  P+GL R   +   +R L   T+ G  + C S
Sbjct: 598 SWQSIANALREKGVPSGLLRILQSYFTDRELIFNTSEGPVVRCVS 642


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,058
Number of Sequences: 2352
Number of extensions: 12857
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)