Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0542
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    65   3e-11
At3g17470.1 68416.m02232 RelA/SpoT domain-containing protein / c...    29   3.5  
At1g72110.1 68414.m08335 expressed protein                             29   3.5  
At5g35080.1 68418.m04151 expressed protein                             28   4.7  
At1g51920.1 68414.m05853 expressed protein                             28   6.1  

>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
           factor-related similar to CCAAT-box-binding
           transcription factor (CCAAT-binding factor) (CBF)
           (Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
           musculus]
          Length = 1056

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 32/79 (40%), Positives = 47/79 (59%)
 Frame = +1

Query: 271 IHRLVHLAGINISVHALALLFQISDASTGTSDRYYSALYKKLTNSDILNTTHTALLFSLV 450
           + +LVH A  N+ V +L LL +IS  +   SDR+Y ALY KL     +N++   +   L+
Sbjct: 522 LFKLVHSANFNVGVQSLMLLDKISSKNKIVSDRFYRALYSKLLLPSAMNSSKAEMFIGLL 581

Query: 451 YKSLKQDKNIPRVVAFVKR 507
            +++K D NI RV AF KR
Sbjct: 582 LRAMKNDINIKRVAAFSKR 600



 Score = 45.2 bits (102), Expect(2) = 9e-10
 Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = +2

Query: 5   EIEKMLFRTNISPRAQYYGVCFLNQFYLGK--DDSKVAESLIRIYFSFFK 148
           E++  LFR ++  RA+Y+ V FL+Q  L    +D KVA+ LI +YF+ FK
Sbjct: 398 EVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGEDPKVAKRLIDVYFALFK 447



 Score = 35.1 bits (77), Expect(2) = 9e-10
 Identities = 13/20 (65%), Positives = 19/20 (95%)
 Frame = +2

Query: 167 EIDSRLMSAILTGVKRAYPF 226
           E+DSR++SA+LTGV RA+P+
Sbjct: 486 ELDSRILSALLTGVNRAFPY 505


>At3g17470.1 68416.m02232 RelA/SpoT domain-containing protein /
           calcium-binding EF-hand family protein contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain, Pfam
           profile PF04607: Region found in RelA / SpoT proteins
          Length = 583

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 357 DQRPVLLGLIQEADELRHIEHYAHGSALLARLQVAEAGQEHSQGGGLR*AALQL 518
           D R V++ L+ + DE+RH++H       +  L+V +     +   G    +L+L
Sbjct: 197 DIRAVIMDLVSKLDEMRHLDHLPRYRQQILSLEVLKIYSPLAHAVGANHLSLEL 250


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +1

Query: 271 IHRLVHLAGINISVHALALLFQ---ISDASTGTSDRYYSALYKKLTNSDILNTTHTALLF 441
           IHR++ L  + +  +A+ +            G S RY +  Y   T+S      H   L 
Sbjct: 236 IHRIISLDDVKMVKNAMNMTVNDVLFGMVQAGLS-RYLNQRYDLETSSKSRKNLHNIGLH 294

Query: 442 SLVYKSLKQDKNIPRVVAFVKRRSSC 519
            +V+ +L+ ++NI  +   + + S C
Sbjct: 295 GVVFFNLRPNRNIEDLAKMMAKGSKC 320


>At5g35080.1 68418.m04151 expressed protein
          Length = 282

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 337 ISDASTGTSDRYYSALYKKLTNSDI 411
           +SDAST  S RY+S +Y   T  D+
Sbjct: 172 VSDASTDASQRYHSHVYTNGTTCDL 196


>At1g51920.1 68414.m05853 expressed protein
          Length = 78

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +1

Query: 433 LLFSLVYKSLKQDK--NIPRVVAFVKRRSSCAATCCRPRPAG*SSSCRRSEGLLQEGGH 603
           +LF L+   L Q     IPR     +R    A  CC P P G    C  S  + Q   H
Sbjct: 16  VLFLLLVLPLSQSNATRIPRAPISSRRPICPACVCCEPAPLGSCCRCCASPIVTQTHHH 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,638
Number of Sequences: 28952
Number of extensions: 275138
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)