Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0541
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 29 0.40
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 8.6
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 29.5 bits (63), Expect = 0.40
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 202 FDGSXWRILFLHPRSYRTAMIEVITYWEPGXGPGKYLIWKN-ILVVIFGTFSLV 360
+ G R F H + R A+I + Y + GPGKY+ W + +L + G ++ V
Sbjct: 123 WQGPHDRRFFSHLSTLRAALIAL--YAKGYKGPGKYMTWDSFVLANVVGNYNTV 174
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 392 KIASMASLVPKTKENVPKITTRMFFQ--IKYFPGP 294
+ + MA LVP TK + T RMF Q I YF P
Sbjct: 1010 RFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNP 1044
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 241 RSYRTAMIEVITYWEPGXGPGKYLIWKNILVVIFGTFSL 357
R + TA + + GP YL + +L+++FGT ++
Sbjct: 1465 RGFATARLSFSLLFSRFAGPSIYLGSRTLLMLLFGTMTV 1503
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,428
Number of Sequences: 5004
Number of extensions: 37265
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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