Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0541
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0735 - 24749975-24750601,24751411-24751541,24752150-247523...    32   0.31 
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    31   0.54 
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128...    28   5.1  

>01_05_0735 -
           24749975-24750601,24751411-24751541,24752150-24752336,
           24753801-24753898,24754182-24754689
          Length = 516

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 98  KDKFTXRPELADYIMRTXMVTVCVSIAAAVPQISPLMGVIGAFCFSILGLI 250
           + KF+ R  +   ++RT  +  C  +AA +P    ++GV+GA  F  L  +
Sbjct: 406 RGKFSRRNVVPRLLLRTLYLAFCAFMAAMLPFFGDIVGVVGAVGFIPLDFV 456


>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 98  KDKFTXRPELADYIMRTXMVTVCVSIAAAVPQISPLMGVIGAFCFSILGLI 250
           + +F+ R       +RT  V  C  +AA +P    ++GV+GA  F  L  +
Sbjct: 371 RGRFSRRNVAPRVALRTAYVAACAFVAAMLPFFGDIVGVVGAVGFIPLDFV 421


>01_06_1540 -
           38111557-38111985,38112087-38112311,38112494-38112854,
           38112965-38113058,38113136-38113369,38113891-38113945
          Length = 465

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 137 IMRTXMVTVCVSIAAAVPQISPLMGVIGAFCF 232
           ++RT +V     +A  +P  + ++G++GAF F
Sbjct: 371 VLRTVVVIATTVVAMMIPFFNAVLGLLGAFSF 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,858,005
Number of Sequences: 37544
Number of extensions: 239361
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)