Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0541
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)              46   2e-05
SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.034
SB_31832| Best HMM Match : FtsX (HMM E-Value=2.8)                      35   0.060
SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)              30   1.7  
SB_26783| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  

>SB_43964| Best HMM Match : Aa_trans (HMM E-Value=9.2e-05)
          Length = 332

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 30/99 (30%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
 Frame = +2

Query: 2   FXHEVKLSIAIAVYCTFGLQFFVCXDIMWNGIKDKFTXRPE-LADYIMRTXMVTVCVSIA 178
           F   +KL IA +++ T+ LQF+V  +I+   +  + + + + +AD   RT +V V V +A
Sbjct: 191 FYTTLKLLIAGSMFLTYFLQFYVPVEILLPSVLKRVSKKYQTVADLGFRTSLVLVTVVLA 250

Query: 179 AAVPQISPLMGVIGAFCFSILGLI--AQQ*LKSLRIGNR 289
           A VP++  ++ VIG+   + L +   A   + SLR+ ++
Sbjct: 251 ACVPRLEDVIAVIGSLASTTLCMTFPAAMDIASLRMSSK 289


>SB_15337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
 Frame = +2

Query: 14  VKLSIAIAVYCTFG----LQFFVCXDIMWNGIKDKFTXRPE-LADYIMRTXMVTVCVSIA 178
           V + I +A++   G    L F    +IM   I+     R   +ADY  RT +V V  ++A
Sbjct: 214 VGMGIILAIFYLMGVLGYLAFLRPMEIMQPPIRQCVGERFHGIADYGFRTLLVCVTCALA 273

Query: 179 AAVPQISPLMGVIGAFCFSILGLI 250
             +PQ+S  + ++G+   S L L+
Sbjct: 274 LGIPQLSNFISLVGSIGSSALALV 297


>SB_31832| Best HMM Match : FtsX (HMM E-Value=2.8)
          Length = 186

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 98  KDKFTXRPELADYIMRTXMVTVCVSIAAAVPQISPLMGVIGAFCFSILGLI 250
           K  FT +     Y++R   V + V+IA  VP+ S LM +IG+     L L+
Sbjct: 83  KTPFTKQERGVVYLLRAVFVVLTVAIAVFVPEFSLLMAIIGSISGVFLTLV 133


>SB_42789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +2

Query: 26  IAIAVYCTFGLQFFVCXDIMWNGIKDKFTXRPELADY------IMRTXMVTVCVSIAAAV 187
           +A+ V+ +F L  FV  +     +   F      ++Y      I RT +VT  + I+  V
Sbjct: 371 VALNVFFSFPLPLFVVIETFDGLLLPHFPYVGRESNYHWVWLLITRTLLVTFALFISLIV 430

Query: 188 PQISPLMGVIGAF 226
           P    LMG IG+F
Sbjct: 431 PHFGLLMGFIGSF 443


>SB_43965| Best HMM Match : Aa_trans (HMM E-Value=7.5e-08)
          Length = 373

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   FXHEVKLSIAIAVYCTFGLQFFVCXDIMWNGIKDKF--TXRPELADYIMRTXMVTVC 166
           F   VKL IA +++ T+ +QF+V   I++  +K +   T  P L D   R  M+ VC
Sbjct: 267 FYMSVKLIIAASIFLTYFIQFYVITSILFPFVKGRVRQTIAP-LVDIAFR--MLLVC 320


>SB_26783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 519 IRCGFXKNVVFHIKRHQYF 575
           +RCGF KNV  H K H ++
Sbjct: 52  MRCGFGKNVCIHRKEHYFY 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,913
Number of Sequences: 59808
Number of extensions: 273093
Number of successful extensions: 555
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)