Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0541
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine r...    29   3.5  
AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical ...    28   4.6  

>AC006617-11|AAF39766.2|  356|Caenorhabditis elegans Serpentine
           receptor, class z protein56 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 298 PGKYLIWKNILVVIFGTFSLV 360
           P KY+ W+ ++VVIF   SLV
Sbjct: 228 PQKYIFWQTMIVVIFQLISLV 248


>AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical
           protein Y32F6A.4 protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 137 IMRTXMVTVCVSIAAAVPQISPLMGVIGAFCFSILGLI 250
           I+RT ++   V +A +VP   PL+ ++G    ++  +I
Sbjct: 363 IVRTGIMVAVVFVAESVPTFGPLLDLVGGSTLTLTSVI 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,911,657
Number of Sequences: 27780
Number of extensions: 208331
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)