Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0541
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 23  SIAIAVYCTFGLQFFVCXDIMW 88
           S A++ +C   L FF C  I W
Sbjct: 447 SYAVSGFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 23  SIAIAVYCTFGLQFFVCXDIMW 88
           S A++ +C   L FF C  I W
Sbjct: 500 SYAVSGFCLLFLMFFECIAISW 521


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 401 KSFKIASMASLVPKTKENVPKITTRMFFQIKYFP 300
           KS + A++ S +PKT         R FF++   P
Sbjct: 523 KSMEAANIMSKLPKTVRTPTDSYIRSFFELLQNP 556


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 43  VYCNGYRQFY 14
           +YCN YR+ Y
Sbjct: 99  LYCNNYRKLY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,184
Number of Sequences: 438
Number of extensions: 2518
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)