Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0541
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41800.1 68418.m05089 amino acid transporter family protein s...    29   3.2  
At5g23810.1 68418.m02795 amino acid transporter family protein s...    27   7.4  
At1g10010.1 68414.m01129 amino acid permease, putative similar t...    27   9.8  

>At5g41800.1 68418.m05089 amino acid transporter family protein
           similar to amino acid permease 1 [Nicotiana sylvestris]
           GI:976402; belongs to INTERPRO:IPR002422 amino
           acid/polyamine transporter, family II
          Length = 452

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 98  KDKFTXRPELADYIMRTXMVTVCVSIAAAVPQISPLMGVIGAFCFSILGLI 250
           K  F+ R  +   I+RT  +  C  +AA +P    +  V+GAF F  L  +
Sbjct: 342 KGIFSKRNLVPRLILRTLYMAFCGFMAAMLPFFGDINAVVGAFGFIPLDFV 392


>At5g23810.1 68418.m02795 amino acid transporter family protein
           similar to amino acid carrier [Ricinus communis]
           GI:3293031; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 467

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 140 MRTXMVTVCVSIAAAVPQISPLMGVIGAFCF 232
           +RT  V +   +A   P  + ++GV+GA  F
Sbjct: 381 LRTMYVLITTGVAVMFPYFNEVLGVVGALAF 411


>At1g10010.1 68414.m01129 amino acid permease, putative similar to
           amino acid permease I GI:22641 from [Arabidopsis
           thaliana]; GC splice site at position 1256 is predicted
           from alignment and not confirmed experimentally
          Length = 475

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 116 RPELADYIMRTXMVTVCVSIAAAVPQISPLMGVIGAFCF 232
           R  L   + RT  V +   +A   P  + ++G++GAF F
Sbjct: 373 RVNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAF 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,288
Number of Sequences: 28952
Number of extensions: 194050
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)