Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0539
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 33 0.24
03_04_0055 + 16891212-16891848,16893166-16893206 30 1.7
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 30 1.7
09_02_0548 - 10467342-10468810,10470309-10471632 29 2.3
08_02_0311 - 15635165-15635590,15635777-15638698 29 3.0
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 28 5.2
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 5.2
05_01_0111 - 752045-752641 28 5.2
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 6.9
06_01_0602 - 4342333-4342790,4342899-4345623 28 6.9
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 28 6.9
>05_01_0214 - 1615519-1616775
Length = 418
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 177 DRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
D GH G GH G H H G + H+D++H
Sbjct: 183 DHGH-GHGHGHGHGHSHDHDHGGSDHDHHHHEDQEH 217
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -2
Query: 201 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
P + QQ H+ G G H PG G G +DE DE
Sbjct: 175 PPPQQQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHDEDEDEDE 220
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 186 HQQDRGHLGDGHDEGRSHLP----GLGHAGQEDLQRRHDDEQHDE 64
H ++ H + DE + GLG ++DL++ HD E DE
Sbjct: 166 HGMEKDHTKEEKDESNKEMDDSEKGLGKEEKDDLEKDHDKEDRDE 210
>09_02_0548 - 10467342-10468810,10470309-10471632
Length = 930
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 317 LELMYLHHASRISI*QTD*HGSFFTSNMKFADVMIYRKDLGMSNTSKTVDTSE 159
+E+M HH + + D +GSF SN K V +Y+ G+S T+ E
Sbjct: 193 MEVMKYHHCVGVFLLDFDRNGSFSMSNFKVTCV-VYQPYFGVSGDVGTITVCE 244
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 189 EHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 67
EH + + D +G+ HLPG G G + L R+ + + D
Sbjct: 184 EHYKIGEYADDDPHDGKLHLPGPGGGGNKSLLARNQNGEFD 224
>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
Length = 605
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 240 ASEEAAMSIGLSNGYPRGMVEIHELQRQAQRSFIMVMSNVG 362
A E ++ G RG ++ LQ A RSF++ + NVG
Sbjct: 256 AIESGRFKHDINGGGKRGTIQAGALQAGAVRSFLVYVDNVG 296
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 207 KRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
K RH + DG DE R + H +E+ + RHD + H +
Sbjct: 202 KSKRHHSSENSDSEESDGRDERRKSVQASEHK-REEKRSRHDKKDHGQ 248
>05_01_0111 - 752045-752641
Length = 198
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = +1
Query: 493 LSGHLRRHHFAFHYTTSRKVLWDKS-----LHIHGATDDG 597
L GH+RRH A R ++ DK +H+HG DDG
Sbjct: 107 LGGHMRRHR-AMTGGMPRAIVVDKKPDVVDVHVHGHDDDG 145
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 531 MESEMMPSEMARQWSRTGGASLATDSLRD 445
M E+ PS R W +G ASLA SLRD
Sbjct: 1 MAGEITPSGSRRSWLSSGAASLAR-SLRD 28
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 27.9 bits (59), Expect = 6.9
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Frame = +3
Query: 126 QVGEIVLHHDHLRGV--HGLAGVRHAEVFSVDHYVSELHVASEEAAMS----IGLSNGYP 287
Q+ +VLHH+HL GV G+A + + + H + + + + +S + LS+
Sbjct: 444 QLRWLVLHHNHLAGVIPPGIAQCVNLQNLDLSHNMLRGKIPDDLSELSGLLYLNLSSNLL 503
Query: 288 RGMVEIHELQRQAQRSFIMVMSN-VGKSIPVRTGD--TMTYICIS 413
GM+ + R A + + SN + IP + G + Y+ +S
Sbjct: 504 EGMIPA-TIGRMAMLQVLNLSSNRLSGDIPTQIGGCVALEYVNVS 547
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 347 HVQCGQEHTGADRRHDDVHLHLQTSNRTE-GQHKSLRESVARLAPPVLDHCLAISEGIIS 523
H + +T + R H + +H+Q S+R E G + SL L P L L I+
Sbjct: 207 HAANTKMNTESSRSHAILIIHIQRSSRIEDGSNTSLPNGTDNLFPDNLPLVLKSKLLIVD 266
Query: 524 LSITRRVER 550
L+ + R+++
Sbjct: 267 LAGSERIDK 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,611,559
Number of Sequences: 37544
Number of extensions: 410995
Number of successful extensions: 1334
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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