Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0539
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    30   1.5  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    30   1.5  
AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical ...    30   1.5  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.6  
U80451-7|AAB37841.3|  277|Caenorhabditis elegans Collagen protei...    28   4.7  
U23169-3|AAV58882.1|  284|Caenorhabditis elegans Regulator of g ...    28   4.7  
U23169-2|AAM98050.1|  290|Caenorhabditis elegans Regulator of g ...    28   4.7  
U23169-1|AAL02450.1|  363|Caenorhabditis elegans Regulator of g ...    28   4.7  
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     28   4.7  

>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 213 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 67
           + K   +  H    GH  D +D G SH  G    G +     HD  +HD
Sbjct: 348 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 394


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = -2

Query: 213 LQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHD 67
           + K   +  H    GH  D +D G SH  G    G +     HD  +HD
Sbjct: 366 IHKSEGNHSHDNGHGHSHDHNDHGHSH--GHDDHGHDSHGHSHDHNEHD 412


>AC006733-8|AAF60490.1|  600|Caenorhabditis elegans Hypothetical
           protein Y32H12A.7 protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 295 WWRYMSSSDKHNGPSSWSCPMWARAYR 375
           WWRY+  S +H+GP+      WA   R
Sbjct: 120 WWRYLLWSLQHSGPTFIKLGQWASTRR 146


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 449 ETYAAPRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEG 333
           E + AP +    G+    H   G H +A AH GH  + G
Sbjct: 508 EHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHG 546



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -2

Query: 201 PRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
           P H EH + +      H EG  H     H  +  +  RH  E H
Sbjct: 368 PAHHEHHEHKDGAHHEHKEGEHH-EHAAHHDEHGVHHRHHGEHH 410


>U80451-7|AAB37841.3|  277|Caenorhabditis elegans Collagen protein
           17 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -2

Query: 210 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
           Q+   H +HQ  QD+  L D  +      P   H G +D Q   + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174


>U23169-3|AAV58882.1|  284|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform c protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 603 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 511
           +N +   ++DM+ F P     RR++E++  P
Sbjct: 104 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 134


>U23169-2|AAM98050.1|  290|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform b protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 603 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 511
           +N +   ++DM+ F P     RR++E++  P
Sbjct: 110 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 140


>U23169-1|AAL02450.1|  363|Caenorhabditis elegans Regulator of g
           protein signalingprotein 3, isoform a protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 603 KNTIVRSSMDMQGFIPEYLSTRRVMESEMMP 511
           +N +   ++DM+ F P     RR++E++  P
Sbjct: 183 RNAVASETLDMEEFAPAIKEVRRLLENDQFP 213


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -2

Query: 210 QKRPRHVEHQ--QDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
           Q+   H +HQ  QD+  L D  +      P   H G +D Q   + + H +
Sbjct: 124 QEPQDHKDHQEPQDKTELQDNQEPQDKSAPSQPHQGTQDSQESQEPKDHQD 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,289,739
Number of Sequences: 27780
Number of extensions: 318241
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)