Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0539
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63100.1 68416.m07087 glycine-rich protein                          31   0.62 
At3g21300.1 68416.m02691 RNA methyltransferase family protein co...    30   1.4  
At4g09630.1 68417.m01583 expressed protein contains Pfam profile...    29   3.3  
At5g37040.1 68418.m04442 F-box family protein contains Pfam prof...    27   7.7  
At4g18600.1 68417.m02755 expressed protein                             27   7.7  

>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 186 HQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
           H    GH   GHD G  H  G GH      +R   D +H
Sbjct: 77  HGYGHGHREHGHDRGHGHGRGHGHGHGHGHRRHGRDHRH 115



 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = -2

Query: 195 HVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQH 70
           H EH  DRGH   GH  G  H  G GH       R   D  H
Sbjct: 83  HREHGHDRGH---GHGRGHGHGHGHGHRRHGRDHRHGRDRGH 121


>At3g21300.1 68416.m02691 RNA methyltransferase family protein
           contains TIGRfam TIGR00479: RNA methyltransferase, TrmA
           family
          Length = 554

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 517 DAFGDGQTMVKDWWCKSRNGFPQRLMLPLG---TIGGLEMQMYVIVSPVRTGMLLPTLD 350
           D + D +  +  + C+S  GF + LML  G     G LE+ +  + S  +  +L P +D
Sbjct: 263 DCWRDPELSLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVD 321


>At4g09630.1 68417.m01583 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 711

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 219 NDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDE 64
           ND   +P   E  +D     D HD        +GH G E+ +   D+ +H+E
Sbjct: 220 NDGHHQPFDTESNEDDSI--DSHDTQGDEYVDMGHDGDENEESHKDNHKHNE 269


>At5g37040.1 68418.m04442 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 242

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 153 DHLRGVHGLAGVRHAEVFSVDHY 221
           DHLRG H L G      F  DH+
Sbjct: 85  DHLRGQHSLYGTCDGNFFLYDHF 107


>At4g18600.1 68417.m02755 expressed protein
          Length = 1907

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 431 EGQHKSLRESVAR--LAPPVLDHC-LAISEGIISLSITRRVERYSGINPCI 574
           +  H S  ++ A   L+P VLD   L+++E +    ++  +E + GINPC+
Sbjct: 694 DSTHPSCAKAAAETNLSPEVLDSTKLSVAEAVPQEQVS--LEEFVGINPCL 742


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,689,545
Number of Sequences: 28952
Number of extensions: 303673
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)