Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0538
         (634 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7R8T4 Cluster: Putative uncharacterized protein PY0713...    36   0.81 
UniRef50_Q4A2W8 Cluster: Putative RING finger protein; n=1; Emil...    33   5.7  

>UniRef50_Q7R8T4 Cluster: Putative uncharacterized protein PY07136;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY07136 - Plasmodium yoelii
           yoelii
          Length = 153

 Score = 35.9 bits (79), Expect = 0.81
 Identities = 20/61 (32%), Positives = 36/61 (59%)
 Frame = +3

Query: 282 VLFVLWISIFIIKDRQFIAYLKSKFTEANRRNKINIYAHLEMRKFLHCITPKVIPSNKLL 461
           VLF++ I++FII   +++ Y KSK +EA R N+I     +   K L  +  ++I + K +
Sbjct: 21  VLFIIMIALFIIVVYKYVKY-KSKISEAKRNNEIYEKMKISREKQLQKLEEEMIINKKKM 79

Query: 462 D 464
           +
Sbjct: 80  N 80


>UniRef50_Q4A2W8 Cluster: Putative RING finger protein; n=1;
           Emiliania huxleyi virus 86|Rep: Putative RING finger
           protein - Emiliania huxleyi virus 86
          Length = 242

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +1

Query: 361 KPIDVTK*IYMHILR*GNFFIALHQKLYLQTNYLITEVQWRYFEKYSEGLTSMSSP 528
           +P DV K I   +     F    +QKL   TN+++ E++W+  + ++  +T +SSP
Sbjct: 87  QPTDVYKYIKKSLPSLHQFIHRYNQKL---TNHILIEIEWKQLDPFNRRMTRVSSP 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,995,668
Number of Sequences: 1657284
Number of extensions: 8867077
Number of successful extensions: 16967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16964
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)