Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0538
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    30   0.24 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.3  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    27   3.0  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   9.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.1  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   9.1  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   9.1  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   9.1  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.1  

>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 FLQRDVYDSNVKLKVLFVLWISIFIIKDRQFIAYLKSKFTEANR 371
           F   D  D+ + L + FV+W+S   IK  ++++Y    F    R
Sbjct: 462 FAAGDFVDAYILLPLFFVIWLSYKFIKKTKWVSYEDMDFINGRR 505


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 437 FWCNAMKKFPHLKMCIYIYFVTS 369
           F+  ++  FP+ K CI+IY V+S
Sbjct: 122 FYFYSLPNFPYSKTCIFIYTVSS 144


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 103 PIYFHL*LISTHFLQESFKRILPSKY-ELPTL 11
           PI FHL  I  H + E+F R++     +LPTL
Sbjct: 152 PISFHLTSIFDHSIFEAFSRVIQKLIPQLPTL 183


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 111 LYNPFIFTYNSLAPIFFRNHLSEFFQAST 25
           LY PF  T   +  +FF N ++E+ + +T
Sbjct: 87  LYGPFWITTTVIQALFFSNSITEYARYAT 115


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 513 LNVVAFSEYSNLLSCDHHHHLLFMIKDVL 599
           L+  A S YS  L+ DHHH  +  +  +L
Sbjct: 407 LHFRALSAYSLNLTADHHHSEILHVSQLL 435


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -2

Query: 96  IFTYNSLAPIFFRNHLSEFFQASTSCLHC 10
           I T NSLA   FR  L E       C HC
Sbjct: 655 IMTRNSLAQHNFRRSLPEMISNRKICDHC 683


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 434 WCNAMKKFPHLKMCIYIYFVTSIGFSKFRF*ISYELPIFNNK 309
           +C A+K   +L  C YIY       SKFR      + +++NK
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNK 83


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 434 WCNAMKKFPHLKMCIYIYFVTSIGFSKFRF*ISYELPIFNNK 309
           +C A+K   +L  C YIY       SKFR      + +++NK
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNK 83


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 427 LHQKLYLQTNYLITEVQWRYFEKYSEGLTSMSSP 528
           L+   YL T Y +  +    +E+  +GL ++SSP
Sbjct: 279 LNSMFYLLTFYSLRAITMLIYEQTLQGLRTLSSP 312


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 434 WCNAMKKFPHLKMCIYIYFVTSIGFSKFRF*ISYELPIFNNK 309
           +C A+K   +L  C YIY       SKFR      + +++NK
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSASSKFRSFTFGCVVVYHNK 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,313,790
Number of Sequences: 5004
Number of extensions: 42406
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)