Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0538
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1146 - 34440647-34441674,34442138-34443896                       29   4.1  
03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363...    28   5.4  
07_01_1039 - 9037689-9038225,9038831-9040627                           27   9.4  
01_05_0343 + 21155237-21155496,21155596-21155842,21155939-211560...    27   9.4  

>02_05_1146 - 34440647-34441674,34442138-34443896
          Length = 928

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 297 WISIFIIKD-RQFIAYLKSKFTEANRRNKINI 389
           W ++F  K  R+F AY+ ++FTE  ++N + I
Sbjct: 760 WGAVFFPKHWREFYAYMAARFTEDAKQNPVQI 791


>03_01_0471 +
           3629158-3629185,3630027-3630058,3630272-3630344,
           3630745-3630969,3631319-3631789,3632286-3633118
          Length = 553

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 234 ATFLQRDVYDSNVKLKVLFVLWISIFIIKDRQFIAYLKSKFTEANRRNKINIYA 395
           A F    VYD N    VL  + +++F +     + YL  KFT A     I+IYA
Sbjct: 101 AGFKAAIVYD-NENSGVLISIHLALFRLWGHMVLHYLTLKFTVAGSSGGIHIYA 153


>07_01_1039 - 9037689-9038225,9038831-9040627
          Length = 777

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 119 LFCYITHLFSLITH*HPFSSGII*ANSSKQVRVA 18
           + C  THL +  TH HP S+ ++ A ++ +V  A
Sbjct: 86  VLCGATHLLAAFTHAHPHSAPLLRALTAAKVLAA 119


>01_05_0343 + 21155237-21155496,21155596-21155842,21155939-21156064,
            21156291-21156428,21156513-21156650,21156756-21157013,
            21157404-21157541,21158023-21158092,21158267-21158480,
            21158614-21158719,21159844-21160077,21160836-21161000,
            21161083-21161232,21161308-21161399,21161631-21161712,
            21161800-21161883,21161980-21162096,21162179-21162289,
            21162698-21162892,21164495-21164575,21165671-21165720,
            21165978-21165990,21166518-21166600,21166693-21166833,
            21166879-21166936,21167023-21167072,21167474-21167582,
            21167666-21167727,21168321-21168363
          Length = 1204

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 131  SHVHLFCYITHLF 93
            S ++LFCY+THLF
Sbjct: 1080 SELYLFCYLTHLF 1092


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,686
Number of Sequences: 37544
Number of extensions: 211933
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)