Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0538
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014940-8|AAY43994.1|  356|Caenorhabditis elegans Hypothetical ...    29   2.8  
U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AF014940-8|AAY43994.1|  356|Caenorhabditis elegans Hypothetical
           protein W02D7.2 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 427 LHQKLYLQTNYLITEVQWRYFEKYSEGLTSMSSPF 531
           LH++ YL T Y  T+ +  + EKY E L+S   PF
Sbjct: 241 LHKQGYLATEY--TDEKHLFNEKYFEALSSQPKPF 273


>U39678-5|ABP49528.1|  213|Caenorhabditis elegans Hypothetical
           protein C39D10.3b protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 300 ISIFIIKDRQFI---AYLKSKFTEANRRNKINIYAHLEMRKFLHCITPKVI 443
           IS   I D  F+   A   SKF    R +KI +Y+    R+F  C   ++I
Sbjct: 119 ISSLKIVDEVFVGVPAVTNSKFVNLIRASKIAVYSETHPRRFADCTYHRII 169


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 300 ISIFIIKDRQFI---AYLKSKFTEANRRNKINIYAHLEMRKFLHCITPKVI 443
           IS   I D  F+   A   SKF    R +KI +Y+    R+F  C   ++I
Sbjct: 236 ISSLKIVDEVFVGVPAVTNSKFVNLIRASKIAVYSETHPRRFADCTYHRII 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,529,366
Number of Sequences: 27780
Number of extensions: 228384
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)