Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0537
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 127 1e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 85 8e-18
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 84 2e-17
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 71 1e-13
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.34
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 27 3.1
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.1
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 4.1
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 4.1
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 7.2
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 7.2
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 127 bits (307), Expect = 1e-30
Identities = 54/69 (78%), Positives = 63/69 (91%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+E+E
Sbjct: 66 VDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAE 125
Query: 435 SCDCLQGFQ 461
+CD LQGFQ
Sbjct: 126 ACDALQGFQ 134
Score = 115 bits (277), Expect = 5e-27
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLVDLEP 70
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+SKIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVE
Sbjct: 148 GTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVE 194
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 85.0 bits (201), Expect = 8e-18
Identities = 34/68 (50%), Positives = 50/68 (73%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +R+ ++
Sbjct: 72 VDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMAD 131
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 132 NCSGLQGF 139
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 222
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 223 SGGKYVPRAILSTWSP 270
GK+VPR+I P
Sbjct: 61 GQGKFVPRSIYVDLEP 76
Score = 41.9 bits (94), Expect = 8e-05
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++
Sbjct: 154 GALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLD 200
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 83.8 bits (198), Expect = 2e-17
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D +R+ ++
Sbjct: 68 VDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCSGLQGF 135
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLE--RINVYYNEASGGK 234
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 235 YVPRAILSTWSP 270
YVPR+I P
Sbjct: 61 YVPRSIYVDLEP 72
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +2
Query: 497 YGHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
+G L+ ++ EY + +SV P+P+VS +VVEPYN+ L+ H ++
Sbjct: 149 FGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLD 196
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 71.3 bits (167), Expect = 1e-13
Identities = 31/69 (44%), Positives = 46/69 (66%)
Frame = +1
Query: 64 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 243
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 244 RAILSTWSP 270
RAIL P
Sbjct: 63 RAILIDLEP 71
Score = 60.1 bits (139), Expect = 3e-10
Identities = 23/70 (32%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKE 428
+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D++ +E
Sbjct: 67 IDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDRE 125
Query: 429 SESCDCLQGF 458
++ D L+GF
Sbjct: 126 ADGSDSLEGF 135
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQL 634
G L+ ++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L
Sbjct: 150 GSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRL 195
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 460 NLHIPSVDXPGPVWAPSHLKDP*RVPRQNHEHILSSPLAQS 582
N+H PS + A + +++P +P+QNHEH SPL +S
Sbjct: 623 NIHHPSANLLDASAALNPVQNPLLMPQQNHEH---SPLVRS 660
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 363 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 452
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 100 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 201
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Frame = +2
Query: 494 RYGHPLISKIREEYP-DRIMNTYSVVP--SPKVSDTVVE---PYN--ATLSVHQL 634
+Y H + SK++ EYP D+++ SV+ PK VVE P N A L+ H +
Sbjct: 392 QYAHVVASKLQREYPRDKVLYYSSVLTEFDPKGIQEVVESLRPNNFFAILAAHSI 446
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 294 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 395
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 4.1
Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Frame = -3
Query: 352 PAPDCP----KTKLSGRKICPKGPERTESMVPGSKSTGWRGARTCRRRLHCSIH*CAPTA 185
P P CP K L G+ I P E++ R C + L C H C
Sbjct: 667 PCPPCPYFVKKRCLCGKHILENQPCYRENV---------RCGELCNKLLSCKTHFCEKLC 717
Query: 184 SQSPHGRHRWGRCRARQR*SPRT*LQSGYHIGRPVDERFP 65
+ ++R QS H G P DER P
Sbjct: 718 HPDGECESSCKKECGKRRMYCEHVCQSPCHAGHPCDERIP 757
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 228 RQVRAPRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGN 356
R+V AP+H GT RS +FR ++ FGQ GN
Sbjct: 486 REVFAPKH-ARRRLGTRFHSRSSHRPSVFRDNSVAFGQLDNGN 527
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 44 KITYTK*GKSFIYRPANVV 100
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 315 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 446
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 352 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 257
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 350 SAGLSEDEVVRTEDLSERSRADRVH 276
S G+S E+ R +D S+ R +RVH
Sbjct: 238 STGISGFEINRQKDTSDMKRNNRVH 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,677
Number of Sequences: 5004
Number of extensions: 58164
Number of successful extensions: 174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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