Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0537
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 148 3e-36
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 148 3e-36
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 148 3e-36
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 148 4e-36
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 146 8e-36
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 146 1e-35
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 145 3e-35
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 145 3e-35
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 144 5e-35
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 81 8e-16
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 81 8e-16
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 80 1e-15
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 80 1e-15
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 80 1e-15
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 80 1e-15
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 78 6e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 2e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 62 2e-10
At4g37190.1 68417.m05265 expressed protein 30 1.5
At4g32010.1 68417.m04557 transcriptional factor B3 family protei... 29 2.0
At3g62910.1 68416.m07067 peptide chain release factor, putative ... 29 2.0
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 29 2.0
At1g57700.1 68414.m06548 protein kinase family protein contains ... 28 6.2
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.2
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 148 bits (359), Expect = 3e-36
Identities = 64/69 (92%), Positives = 69/69 (100%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E
Sbjct: 66 MDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 126 NCDCLQGFQ 134
Score = 118 bits (283), Expect = 5e-27
Identities = 49/70 (70%), Positives = 59/70 (84%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 148 bits (359), Expect = 3e-36
Identities = 64/69 (92%), Positives = 69/69 (100%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E
Sbjct: 66 MDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 126 NCDCLQGFQ 134
Score = 120 bits (290), Expect = 6e-28
Identities = 53/70 (75%), Positives = 59/70 (84%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 148 bits (359), Expect = 3e-36
Identities = 64/69 (92%), Positives = 69/69 (100%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E
Sbjct: 66 MDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 126 NCDCLQGFQ 134
Score = 118 bits (284), Expect = 3e-27
Identities = 50/70 (71%), Positives = 60/70 (85%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 148 bits (358), Expect = 4e-36
Identities = 63/69 (91%), Positives = 69/69 (100%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E
Sbjct: 67 MDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAE 126
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 127 NCDCLQGFQ 135
Score = 122 bits (295), Expect = 2e-28
Identities = 54/71 (76%), Positives = 61/71 (85%), Gaps = 1/71 (1%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 237
MREI+H+Q GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 238 VPRAILSTWSP 270
VPRA+L P
Sbjct: 61 VPRAVLMDLEP 71
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVE 195
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 146 bits (355), Expect = 8e-36
Identities = 62/69 (89%), Positives = 69/69 (100%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E
Sbjct: 67 MDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAE 126
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 127 NCDCLQGFQ 135
Score = 127 bits (306), Expect = 7e-30
Identities = 55/71 (77%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 237
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 238 VPRAILSTWSP 270
VPRA+L P
Sbjct: 61 VPRAVLMDLEP 71
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVE 195
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 146 bits (353), Expect = 1e-35
Identities = 62/69 (89%), Positives = 69/69 (100%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E
Sbjct: 66 MDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 126 NCDCLQGFQ 134
Score = 124 bits (300), Expect = 4e-29
Identities = 53/70 (75%), Positives = 61/70 (87%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 241 PRAILSTWSP 270
PRAIL P
Sbjct: 61 PRAILMDLEP 70
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 145 bits (351), Expect = 3e-35
Identities = 62/69 (89%), Positives = 68/69 (98%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E
Sbjct: 66 MDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 126 NCDCLQGFQ 134
Score = 123 bits (297), Expect = 9e-29
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 145 bits (351), Expect = 3e-35
Identities = 62/69 (89%), Positives = 68/69 (98%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E
Sbjct: 66 MDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+CDCLQGFQ
Sbjct: 126 NCDCLQGFQ 134
Score = 123 bits (297), Expect = 9e-29
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 85.4 bits (202), Expect = 3e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 144 bits (349), Expect = 5e-35
Identities = 63/69 (91%), Positives = 68/69 (98%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E
Sbjct: 66 MDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE 125
Query: 435 SCDCLQGFQ 461
+ DCLQGFQ
Sbjct: 126 NSDCLQGFQ 134
Score = 123 bits (296), Expect = 1e-28
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 240
MREI+H+Q GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 241 PRAILSTWSP 270
PRA+L P
Sbjct: 61 PRAVLMDLEP 70
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/47 (87%), Positives = 43/47 (91%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVE
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVE 194
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 80.6 bits (190), Expect = 8e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VRK ++
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 234
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLE 196
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 80.6 bits (190), Expect = 8e-16
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD VRK ++
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 234
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLE 196
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK ++
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 234
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLE 196
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK ++
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 57.6 bits (133), Expect = 7e-09
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 234
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLE 196
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK ++
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 234
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLE 196
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/68 (50%), Positives = 48/68 (70%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +RK ++
Sbjct: 68 VDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 55.2 bits (127), Expect = 4e-08
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 234
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFVDLEP 72
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLE 196
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 77.8 bits (183), Expect = 6e-15
Identities = 32/68 (47%), Positives = 49/68 (72%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 434
+DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+ +RK ++
Sbjct: 68 LDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLAD 127
Query: 435 SCDCLQGF 458
+C LQGF
Sbjct: 128 NCTGLQGF 135
Score = 60.9 bits (141), Expect = 7e-10
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 234
MREI+ + GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 235 YVPRAILSTWSP 270
+VPRA+ P
Sbjct: 61 HVPRAVFLDLEP 72
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVE 640
G L+ ++ ++ + +++ PSP+VS VVEPYN+ LS H L+E
Sbjct: 150 GSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLE 196
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +1
Query: 64 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 243
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 244 RAILSTWSP 270
RA+L P
Sbjct: 63 RALLIDLEP 71
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKE 428
+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D++ +E
Sbjct: 67 IDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDRE 125
Query: 429 SESCDCLQGF 458
++ D L+GF
Sbjct: 126 ADGSDSLEGF 135
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQL 634
G L+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRL 195
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = +1
Query: 64 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 243
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 244 RAILSTWSP 270
RA+L P
Sbjct: 63 RALLIDLEP 71
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +3
Query: 255 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKE 428
+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D++ +E
Sbjct: 67 IDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDRE 125
Query: 429 SESCDCLQGF 458
++ D L+GF
Sbjct: 126 ADGSDSLEGF 135
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQL 634
G L+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRL 195
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 61 MREIVHLQAGQCGNQIGAKFWEIISDEHGI 150
MREIV +Q G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
GI:7801376; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 780
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 265 SKSTGWRGARTCRRRLHC 212
+K +GWR +C +RLHC
Sbjct: 54 AKESGWRECNSCDKRLHC 71
>At3g62910.1 68416.m07067 peptide chain release factor, putative
similar to peptide chain release factor 1 [Escherichia
coli] GI:147567; contains Pfam profiles PF00472:
Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
Length = 422
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -1
Query: 417 LHRGP----SQRAQHPLCSVPWPSCCQRRTVRRRSCPDGRSVRKVQSGQSPW 274
LH P S+++ +C V WP RRT R + +RK++S + W
Sbjct: 17 LHSSPFTLRSRKSPSGVCLVSWPPSRSRRTRRLVCMAEPYLIRKMESVEKTW 68
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 393 LVDSVLDVVRKESESCDCLQGF 458
+++SV VVRKE+E+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At1g57700.1 68414.m06548 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 686
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 287 PLWTFRTDLPSGQLRLRTVRRWQQLGQGTLHR 382
P++T + P+G +LRT R + Q G G L R
Sbjct: 531 PIYTNGDNHPNGSSQLRTQRSYVQRGSGQLSR 562
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 67 EIVHLQAGQCGNQIGAKFWEIISD 138
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,484
Number of Sequences: 28952
Number of extensions: 343004
Number of successful extensions: 1004
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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