Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0536
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    35   0.009
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    30   0.25 
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    30   0.25 
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    29   0.44 
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   5.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.5  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 3   PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
           PKR MSA+M +    RE++K++NP     ++    G+ WK +
Sbjct: 16  PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 9   RPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 125
           RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = +3

Query: 9   RPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKS 125
           RP +A++L+       +   NP +  ++++K  GE+W++
Sbjct: 105 RPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 3   PKRPMSAYMLWLNSAREQIKSENPGLR---VTEIAKKGGEIWKSMKD 134
           PKRP SAY L+  + R +IK E+ G +   V E+ K   E W S+ +
Sbjct: 117 PKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSE 162


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 172 SLALAAFCSHSVLSFIDFQISP 107
           +L L A C +S L+FI +QI P
Sbjct: 173 TLYLVALCYYSYLTFIGYQILP 194


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 589  NTTISRKLKEYESRKNYLMAFYKQNTSAVKDDSNS 485
            N TIS KL E E +KN   A  +Q  + V +  N+
Sbjct: 1113 NRTISSKLAEMEKQKNESKAALEQMKNYVTNIENN 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,569
Number of Sequences: 5004
Number of extensions: 31605
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)