Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0536
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 46 2e-05
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 45 5e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 44 1e-04
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 44 1e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 37 0.012
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 36 0.021
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 28 5.6
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 28 5.6
09_01_0004 - 133130-133897 28 7.4
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 28 7.4
06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21... 27 9.8
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 137
KRP +A+ L+++ R++ K+E+P + V+ +AK+GGE WKSM D+
Sbjct: 93 KRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
PKR M+ +M + + R +K+ NP L TEIAKK GE+W+ M
Sbjct: 599 PKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKD 134
PKRP SA+ +++ R+ K ++P ++ V+ I K GG+ WKSM D
Sbjct: 35 PKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
PKR ++ +M + + R +K+ NP L TEIAKK GE W+ M
Sbjct: 558 PKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM--KDKTEWXXXXXXXXXX 176
PK+P S+++L+ AR Q+ E PG+ + + WK + +K W
Sbjct: 414 PKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAMAA 473
Query: 177 XXXDLESY 200
D+E Y
Sbjct: 474 YKRDMEEY 481
Score = 35.1 bits (77), Expect = 0.049
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
K+P AY+LW +IK E+P E++ G WK++
Sbjct: 158 KKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
Score = 35.1 bits (77), Expect = 0.049
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
PK+PMSAY ++ R + +E V EI + GE WK+M +
Sbjct: 285 PKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 128
PK+P +A+ ++ R+ K ENP ++ + E+ K GE W +M
Sbjct: 49 PKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 163 LAAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFI 56
L F + + S + + PPF+A +V + PG +F+
Sbjct: 64 LQGFLGYVISSTQEAAVLPPFVAFAVRMNPGIWEFV 99
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 109 PPFLAISVTLKPGFSDFICSLALFNHSMYADIGRF 5
PP + S L G +C + NH YAD GRF
Sbjct: 45 PPAASSSSLLPVGRKPRVCVPGVPNHLTYADFGRF 79
>09_01_0004 - 133130-133897
Length = 255
Score = 27.9 bits (59), Expect = 7.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 197 LQCQWRWWRRGRKEG 241
L+C+ RWWRR R+ G
Sbjct: 93 LRCRERWWRRRRRTG 107
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 38 KQREGTDKI*KSWLKSNRNSQKRR*NLEINERQN*MGTESCQGQGAICKRPRIL 199
++ E T K K + + QK++ N ++ N G Q GAICKRPR +
Sbjct: 606 QKAENTAKPWKKFKNDYKQDQKKQVNFIGDDSNNGEGKGKRQ-LGAICKRPRTM 658
>06_01_0021 -
214401-214613,214707-214790,214887-215041,215165-215234,
215334-215509,215631-215803,216715-216938
Length = 364
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 270 VFLPFSLVFEPSFRPLRHHRHWHCKILGLLH 178
+F P LV E +FRP +HR+ + +GL++
Sbjct: 232 IFPPRWLVAENTFRPPYYHRNCMSEFMGLIY 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,291
Number of Sequences: 37544
Number of extensions: 196397
Number of successful extensions: 535
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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