Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0536
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 51 8e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 51 8e-07
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 48 6e-06
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 46 2e-05
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 44 7e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 42 3e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 38 0.006
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 38 0.006
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 38 0.006
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 38 0.006
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 38 0.006
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 38 0.008
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 38 0.008
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 38 0.008
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 38 0.008
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 35 0.058
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 29 2.9
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 29 2.9
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWXXXXXXXXXXXX 182
PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W
Sbjct: 28 PKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYE 85
Query: 183 XDLESY 200
D+ +Y
Sbjct: 86 VDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTEWXXXXXXXXXXXX 182
PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W
Sbjct: 28 PKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTDKSRWEKKAADDKKRYE 85
Query: 183 XDLESY 200
D+ +Y
Sbjct: 86 VDIANY 91
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEW 146
PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +W
Sbjct: 556 PKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKW 603
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMK--DKTEW 146
PKR +AY++W N+ R +K + G + ++AKK G WKSM DK EW
Sbjct: 561 PKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEW 608
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/44 (38%), Positives = 30/44 (68%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
KRPM+A+M+W R+++ ENP + +EI+K+ G WK + ++
Sbjct: 61 KRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 44.0 bits (99), Expect = 9e-05
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
KRPM+A+M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 49 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 94 KRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 143
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 134 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 134
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 143
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 133 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 134
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 143
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 134
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDKTE 143
PKR +SA+ + R +I++ +P +V ++A++ G++WK + +T+
Sbjct: 135 PKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPG--LRVTEIAKKGGEIWKSMKD 134
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 34.7 bits (76), Expect = 0.058
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
P+RP+ YM + ++++ENP ++ +I K G+ W + D
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 18 SAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
S Y+L+ R++I ENP E++K G WK + ++
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,051,354
Number of Sequences: 27780
Number of extensions: 181177
Number of successful extensions: 486
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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