Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0536
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 45 4e-05
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 45 4e-05
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 44 1e-04
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 43 2e-04
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 42 5e-04
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 42 5e-04
At3g28730.1 68416.m03587 structure-specific recognition protein ... 42 5e-04
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 42 5e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 6e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 38 0.008
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 32 0.38
At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr... 30 1.5
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 29 2.0
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 29 2.0
At1g55650.1 68414.m06370 high mobility group (HMG1/2) family pro... 29 3.5
At2g07702.1 68415.m00952 expressed protein 28 6.2
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 6.2
At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase / homogen... 27 8.2
At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase / homogen... 27 8.2
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
PKRP++A+ ++++ R+ KSE+ G + AK GGE WKS+ ++
Sbjct: 115 PKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
PK+P+SAY+++ N R +K EN V E+AK GE WK++ ++
Sbjct: 246 PKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEE 288
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
PK+P S+Y L+ AR+ + E+PG+ + + W + ++
Sbjct: 372 PKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEE 416
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
KRP + Y+LW ++K +NP E + G WK +
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
PK P+SA++++ N R ++ EN V E+AK GE WK++ DK
Sbjct: 255 PKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDK 297
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 6 KRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
KRP S+Y+LW ++K ENP E + G WKS+
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKDK 137
PK+P S+Y L+ R+++ E PG + WK + ++
Sbjct: 379 PKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEE 423
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD 134
PKRP SA+ +++ RE K ENP V + K G+ WKS+ D
Sbjct: 38 PKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 128
PKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM
Sbjct: 53 PKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 128
PKR SA+ ++L R K ENP ++ V+ + K GG+ WKSM
Sbjct: 53 PKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSM 128
PKR MS +M + R+ IK E+PG+ E+ K G+ W+ M
Sbjct: 562 PKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENP-GLRVTEIAKKGGEIWKSMKD 134
PKRP SA+ +++ R K E+P V + K GGE WKS+ D
Sbjct: 35 PKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSM 128
PK+P +A+ +L+ R+Q + ENP ++ + EI K GE WK+M
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 137
PKRP SA+ ++L R++ NP + V + K G WK+M D+
Sbjct: 35 PKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDE 80
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLR-VTEIAKKGGEIWKSMKDK 137
PK+P S + ++L+ R++ NP + V + + G+ WK+M ++
Sbjct: 34 PKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
protein
Length = 362
Score = 29.9 bits (64), Expect = 1.5
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +1
Query: 130 KTKLNGN-RKLPRPRSNMQKT*NLT--MPMAVV-AKGAKRRLKNEGKGQENCCC*IQEK 294
+T+++G +KL NM K + + + +AV KG + +L+N K QENC C EK
Sbjct: 302 RTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGCSEK 360
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 15 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
++ + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 66 LTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 15 MSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
++ + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 67 LTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
>At1g55650.1 68414.m06370 high mobility group (HMG1/2) family
protein / ARID/BRIGHT DNA-binding domain-containing
protein low similarity to Dead Ringer Protein Chain A
Dna-Binding Domain (GI:6573608), Arid-Dna Complex
(GI:20150982) from [Drosophila melanogaster]; contains
Pfam profiles PF00505: HMG (high mobility group) box,
PF01388: ARID/BRIGHT DNA binding domain
Length = 337
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 3 PKRPMSAYMLWLNSAREQIKSENPGLRVTEIAKKGGEIWKSMKD 134
PKR + Y ++ +IK+EN G +V+ K G +W ++ +
Sbjct: 215 PKRQRTGYNFFVAEQSVRIKAENAGQKVSS-PKNFGNMWTNLSE 257
>At2g07702.1 68415.m00952 expressed protein
Length = 152
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Frame = -3
Query: 264 LPFSLVFEPSFRPLRHHRHWHCKILGL--LH-----IAPWPW 160
LP + SFRP+ H C ++GL LH IA WPW
Sbjct: 67 LPLQPIRYGSFRPVFHWIEKPCMLIGLCGLHSEVSFIANWPW 108
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 154 FCSHSVLSFIDFQISPPFLAISVT 83
FC+ SV ++FQI PP + VT
Sbjct: 139 FCADSVFPLLNFQIDPPVQKLYVT 162
>At5g54080.2 68418.m06733 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 270 VFLPFSLVFEPSFRPLRHHRHWHCKILGLLH 178
+F P LV E +FRP +HR+ + +GL++
Sbjct: 323 IFPPRWLVAEHTFRPPYYHRNCMSEFMGLIY 353
>At5g54080.1 68418.m06732 homogentisate 1,2-dioxygenase /
homogentisicase/homogentisate oxygenase / homogentisic
acid oxidase (HGO) identical to SP|Q9ZRA2 Homogentisate
1,2-dioxygenase (EC 1.13.11.5) (Homogentisicase)
(Homogentisate oxygenase) (Homogentisic acid oxidase)
{Arabidopsis thaliana}; contains Pfam profile PF04209:
homogentisate 1,2-dioxygenase
Length = 461
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 270 VFLPFSLVFEPSFRPLRHHRHWHCKILGLLH 178
+F P LV E +FRP +HR+ + +GL++
Sbjct: 323 IFPPRWLVAEHTFRPPYYHRNCMSEFMGLIY 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,349,542
Number of Sequences: 28952
Number of extensions: 164614
Number of successful extensions: 434
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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